Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4126 and GFF4127 overlap by 4 nucleotides GFF4127 and GFF4128 are separated by 44 nucleotides
GFF4126 - hypothetical protein, at 29,650 to 30,534
GFF4126
GFF4127 - Dibenzothiophene desulfurization enzyme B, at 30,531 to 31,622
GFF4127
GFF4128 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 31,667 to 33,295
GFF4128
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1 at 29.799 kb on - strand, within GFF4126 at 30.736 kb on - strand, within GFF4127 at 30.864 kb on + strand, within GFF4127 at 31.076 kb on - strand, within GFF4127 at 31.755 kb on + strand at 31.755 kb on + strand at 31.755 kb on + strand at 31.756 kb on - strand at 31.756 kb on - strand at 31.896 kb on + strand, within GFF4128 at 31.897 kb on - strand, within GFF4128 at 31.948 kb on - strand, within GFF4128 at 31.948 kb on - strand, within GFF4128 at 32.041 kb on - strand, within GFF4128 at 32.041 kb on - strand, within GFF4128 at 32.041 kb on - strand, within GFF4128 at 32.262 kb on + strand, within GFF4128 at 32.263 kb on - strand, within GFF4128 at 32.263 kb on - strand, within GFF4128 at 32.317 kb on - strand, within GFF4128 at 32.428 kb on + strand, within GFF4128 at 32.436 kb on + strand, within GFF4128 at 32.437 kb on - strand, within GFF4128 at 32.601 kb on + strand, within GFF4128 at 32.601 kb on + strand, within GFF4128
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 29,799 - GFF4126 0.17 -0.9 30,736 - GFF4127 0.19 +0.3 30,864 + GFF4127 0.30 -0.3 31,076 - GFF4127 0.50 +0.2 31,755 + -0.4 31,755 + +0.6 31,755 + -0.6 31,756 - -1.3 31,756 - -0.5 31,896 + GFF4128 0.14 -0.3 31,897 - GFF4128 0.14 -0.0 31,948 - GFF4128 0.17 +0.6 31,948 - GFF4128 0.17 -2.3 32,041 - GFF4128 0.23 +1.6 32,041 - GFF4128 0.23 +1.0 32,041 - GFF4128 0.23 -0.2 32,262 + GFF4128 0.37 +0.3 32,263 - GFF4128 0.37 -1.2 32,263 - GFF4128 0.37 +0.6 32,317 - GFF4128 0.40 +1.1 32,428 + GFF4128 0.47 +0.3 32,436 + GFF4128 0.47 -0.1 32,437 - GFF4128 0.47 -0.2 32,601 + GFF4128 0.57 -0.7 32,601 + GFF4128 0.57 -0.6
Or see this region's nucleotide sequence