Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4120 and GFF4121 are separated by 605 nucleotides GFF4121 and GFF4122 are separated by 79 nucleotides GFF4122 and GFF4123 are separated by 131 nucleotides
GFF4120 - no description, at 23,411 to 23,950
GFF4120
GFF4121 - no description, at 24,556 to 24,966
GFF4121
GFF4122 - hypothetical protein, at 25,046 to 25,687
GFF4122
GFF4123 - no description, at 25,819 to 26,691
GFF4123
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.633 kb on - strand, within GFF4120 at 23.786 kb on + strand, within GFF4120 at 23.866 kb on - strand, within GFF4120 at 23.949 kb on - strand at 24.175 kb on + strand at 24.176 kb on - strand at 24.187 kb on - strand at 24.215 kb on + strand at 24.216 kb on - strand at 24.235 kb on - strand at 24.254 kb on - strand at 24.303 kb on + strand at 24.304 kb on - strand at 24.316 kb on + strand at 24.320 kb on + strand at 24.352 kb on + strand at 24.436 kb on - strand at 24.561 kb on + strand at 24.562 kb on - strand at 24.603 kb on + strand, within GFF4121 at 24.725 kb on - strand, within GFF4121 at 24.783 kb on + strand, within GFF4121 at 24.783 kb on + strand, within GFF4121 at 24.783 kb on + strand, within GFF4121 at 24.784 kb on - strand, within GFF4121 at 24.882 kb on - strand, within GFF4121 at 24.893 kb on + strand, within GFF4121 at 24.894 kb on - strand, within GFF4121 at 25.108 kb on + strand at 25.108 kb on + strand at 25.108 kb on + strand at 25.109 kb on - strand at 25.112 kb on + strand, within GFF4122 at 25.113 kb on - strand, within GFF4122 at 25.207 kb on + strand, within GFF4122 at 25.207 kb on + strand, within GFF4122 at 25.220 kb on - strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.387 kb on + strand, within GFF4122 at 25.388 kb on - strand, within GFF4122 at 25.388 kb on - strand, within GFF4122 at 25.486 kb on + strand, within GFF4122 at 25.508 kb on + strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.509 kb on - strand, within GFF4122 at 25.589 kb on + strand, within GFF4122 at 25.589 kb on + strand, within GFF4122 at 25.590 kb on - strand, within GFF4122 at 25.591 kb on + strand, within GFF4122 at 25.725 kb on + strand at 25.725 kb on + strand at 25.725 kb on + strand at 25.726 kb on - strand at 25.757 kb on + strand at 25.757 kb on + strand at 25.757 kb on + strand at 25.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 23,633 - GFF4120 0.41 -0.9 23,786 + GFF4120 0.69 +1.2 23,866 - GFF4120 0.84 +0.1 23,949 - -1.1 24,175 + +0.6 24,176 - +0.8 24,187 - +0.3 24,215 + -0.4 24,216 - -0.1 24,235 - +0.8 24,254 - -0.2 24,303 + +2.6 24,304 - -0.0 24,316 + +0.5 24,320 + +0.2 24,352 + +0.3 24,436 - -0.2 24,561 + -0.4 24,562 - -0.9 24,603 + GFF4121 0.11 -1.4 24,725 - GFF4121 0.41 -0.5 24,783 + GFF4121 0.55 -0.2 24,783 + GFF4121 0.55 -0.5 24,783 + GFF4121 0.55 -2.4 24,784 - GFF4121 0.55 -0.1 24,882 - GFF4121 0.79 -0.7 24,893 + GFF4121 0.82 -1.0 24,894 - GFF4121 0.82 -2.5 25,108 + -0.9 25,108 + -0.4 25,108 + +0.6 25,109 - -2.4 25,112 + GFF4122 0.10 +1.6 25,113 - GFF4122 0.10 -0.1 25,207 + GFF4122 0.25 +0.6 25,207 + GFF4122 0.25 +0.3 25,220 - GFF4122 0.27 +0.1 25,387 + GFF4122 0.53 +1.5 25,387 + GFF4122 0.53 +1.4 25,387 + GFF4122 0.53 +0.3 25,387 + GFF4122 0.53 -0.4 25,387 + GFF4122 0.53 -1.0 25,387 + GFF4122 0.53 -0.8 25,388 - GFF4122 0.53 -0.2 25,388 - GFF4122 0.53 -0.6 25,486 + GFF4122 0.69 -1.4 25,508 + GFF4122 0.72 -0.3 25,509 - GFF4122 0.72 -1.1 25,509 - GFF4122 0.72 -0.8 25,509 - GFF4122 0.72 -0.6 25,589 + GFF4122 0.85 +1.2 25,589 + GFF4122 0.85 +0.5 25,590 - GFF4122 0.85 -0.7 25,591 + GFF4122 0.85 +0.1 25,725 + +0.3 25,725 + -0.1 25,725 + -0.4 25,726 - +0.1 25,757 + +0.1 25,757 + +0.5 25,757 + -0.0 25,864 + +0.2
Or see this region's nucleotide sequence