Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4107 and GFF4108 are separated by 7 nucleotides GFF4108 and GFF4109 overlap by 4 nucleotides GFF4109 and GFF4110 overlap by 4 nucleotides GFF4110 and GFF4111 are separated by 95 nucleotides
GFF4107 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 10,356 to 11,159
GFF4107
GFF4108 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 11,167 to 11,913
GFF4108
GFF4109 - Aspartate aminotransferase (EC 2.6.1.1), at 11,910 to 13,148
GFF4109
GFF4110 - ABC-type amino acid transport/signal transduction system, periplasmic component/domain, at 13,145 to 13,969
GFF4110
GFF4111 - ABC-type amino acid transport/signal transduction system, periplasmic component/domain, at 14,065 to 14,913
GFF4111
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.645 kb on + strand, within GFF4108 at 11.646 kb on - strand, within GFF4108 at 11.853 kb on - strand at 12.004 kb on + strand at 12.005 kb on - strand at 12.143 kb on - strand, within GFF4109 at 12.230 kb on - strand, within GFF4109 at 12.230 kb on - strand, within GFF4109 at 12.404 kb on - strand, within GFF4109 at 12.404 kb on - strand, within GFF4109 at 12.584 kb on - strand, within GFF4109 at 12.884 kb on - strand, within GFF4109
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 11,645 + GFF4108 0.64 +0.1 11,646 - GFF4108 0.64 -0.5 11,853 - -1.7 12,004 + +0.1 12,005 - +1.3 12,143 - GFF4109 0.19 -0.4 12,230 - GFF4109 0.26 -1.1 12,230 - GFF4109 0.26 -0.9 12,404 - GFF4109 0.40 +0.4 12,404 - GFF4109 0.40 -0.0 12,584 - GFF4109 0.54 +0.1 12,884 - GFF4109 0.79 -1.2
Or see this region's nucleotide sequence