Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4096 and GFF4097 are separated by 3 nucleotides GFF4097 and GFF4098 are separated by 0 nucleotides GFF4098 and GFF4099 are separated by 364 nucleotides
GFF4096 - no description, at 307,285 to 308,307
GFF4096
GFF4097 - hypothetical protein, at 308,311 to 308,937
GFF4097
GFF4098 - hypothetical protein, at 308,938 to 309,126
GFF4098
GFF4099 - Ser/Thr protein phosphatase family protein, at 309,491 to 310,153
GFF4099
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1
2 at 308.061 kb on + strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.129 kb on - strand, within GFF4096 at 308.881 kb on + strand at 308.882 kb on - strand at 308.882 kb on - strand at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.048 kb on - strand, within GFF4098 at 309.083 kb on + strand, within GFF4098 at 309.084 kb on - strand, within GFF4098 at 309.256 kb on + strand at 309.308 kb on - strand at 309.308 kb on - strand at 309.492 kb on + strand at 309.571 kb on - strand, within GFF4099 at 309.587 kb on + strand, within GFF4099 at 309.588 kb on - strand, within GFF4099 at 309.796 kb on + strand, within GFF4099 at 309.880 kb on + strand, within GFF4099 at 309.922 kb on - strand, within GFF4099 at 309.922 kb on - strand, within GFF4099
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 308,061 + GFF4096 0.76 +1.9 308,129 - GFF4096 0.83 -0.6 308,129 - GFF4096 0.83 -0.1 308,881 + +1.6 308,882 - +0.4 308,882 - -1.3 309,048 - GFF4098 0.58 +0.1 309,048 - GFF4098 0.58 +0.4 309,048 - GFF4098 0.58 -0.3 309,083 + GFF4098 0.77 +0.2 309,084 - GFF4098 0.77 +0.3 309,256 + -0.1 309,308 - -0.7 309,308 - +0.6 309,492 + -0.9 309,571 - GFF4099 0.12 +0.0 309,587 + GFF4099 0.14 +0.6 309,588 - GFF4099 0.15 -0.6 309,796 + GFF4099 0.46 +0.6 309,880 + GFF4099 0.59 -1.1 309,922 - GFF4099 0.65 +0.7 309,922 - GFF4099 0.65 -0.5
Or see this region's nucleotide sequence