Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4069 and GFF4070 are separated by 191 nucleotides GFF4070 and GFF4071 are separated by 67 nucleotides GFF4071 and GFF4072 are separated by 116 nucleotides GFF4072 and GFF4073 overlap by 4 nucleotides
GFF4069 - DNA-binding heavy metal response regulator, at 284,442 to 285,125
GFF4069
GFF4070 - no description, at 285,317 to 285,712
GFF4070
GFF4071 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 285,780 to 286,205
GFF4071
GFF4072 - hypothetical protein, at 286,322 to 286,693
GFF4072
GFF4073 - Copper tolerance protein, at 286,690 to 288,114
GFF4073
Position (kb) 285
286
287 Strain fitness (log2 ratio) -1
0
1 at 284.836 kb on + strand, within GFF4069 at 284.837 kb on - strand, within GFF4069 at 285.082 kb on + strand at 285.136 kb on + strand at 285.137 kb on - strand at 285.163 kb on - strand at 285.172 kb on + strand at 285.172 kb on + strand at 285.205 kb on - strand at 285.208 kb on + strand at 285.209 kb on - strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.313 kb on + strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.314 kb on - strand at 285.440 kb on + strand, within GFF4070 at 285.440 kb on + strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.441 kb on - strand, within GFF4070 at 285.484 kb on - strand, within GFF4070 at 285.553 kb on + strand, within GFF4070 at 285.554 kb on - strand, within GFF4070 at 285.767 kb on + strand at 285.768 kb on - strand at 286.059 kb on - strand, within GFF4071 at 286.203 kb on + strand at 286.204 kb on - strand at 286.293 kb on + strand at 286.469 kb on + strand, within GFF4072 at 286.469 kb on + strand, within GFF4072 at 286.469 kb on + strand, within GFF4072 at 286.490 kb on + strand, within GFF4072 at 286.491 kb on - strand, within GFF4072 at 286.571 kb on + strand, within GFF4072
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 284,836 + GFF4069 0.58 +0.2 284,837 - GFF4069 0.58 +0.7 285,082 + +1.0 285,136 + -0.7 285,137 - -0.3 285,163 - -0.3 285,172 + +1.3 285,172 + -1.1 285,205 - -0.0 285,208 + +1.0 285,209 - -0.0 285,313 + +0.2 285,313 + -0.1 285,313 + +0.4 285,313 + -0.4 285,313 + -0.3 285,313 + -0.1 285,313 + +0.4 285,314 - -1.7 285,314 - +0.1 285,314 - +0.5 285,314 - +0.3 285,440 + GFF4070 0.31 -0.8 285,440 + GFF4070 0.31 +0.3 285,441 - GFF4070 0.31 +0.0 285,441 - GFF4070 0.31 +1.0 285,484 - GFF4070 0.42 -0.7 285,553 + GFF4070 0.60 -0.2 285,554 - GFF4070 0.60 -1.1 285,767 + -0.5 285,768 - -0.1 286,059 - GFF4071 0.65 +0.2 286,203 + +0.2 286,204 - +0.6 286,293 + -0.4 286,469 + GFF4072 0.40 -0.3 286,469 + GFF4072 0.40 +1.6 286,469 + GFF4072 0.40 -0.4 286,490 + GFF4072 0.45 +0.1 286,491 - GFF4072 0.45 -0.5 286,571 + GFF4072 0.67 -0.6
Or see this region's nucleotide sequence