Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4002 and GFF4003 are separated by 28 nucleotides GFF4003 and GFF4004 are separated by 9 nucleotides
GFF4002 - Putative transmembrane protein, at 207,076 to 208,608
GFF4002
GFF4003 - FIGfam005179, at 208,637 to 209,467
GFF4003
GFF4004 - Homoserine kinase (EC 2.7.1.39), at 209,477 to 210,541
GFF4004
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1
2 at 207.853 kb on + strand, within GFF4002 at 207.854 kb on - strand, within GFF4002 at 207.854 kb on - strand, within GFF4002 at 207.862 kb on + strand, within GFF4002 at 207.862 kb on + strand, within GFF4002 at 207.863 kb on - strand, within GFF4002 at 207.863 kb on - strand, within GFF4002 at 207.908 kb on + strand, within GFF4002 at 207.908 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.015 kb on + strand, within GFF4002 at 208.016 kb on - strand, within GFF4002 at 208.016 kb on - strand, within GFF4002 at 208.096 kb on + strand, within GFF4002 at 208.097 kb on - strand, within GFF4002 at 208.376 kb on - strand, within GFF4002 at 208.376 kb on - strand, within GFF4002 at 208.854 kb on + strand, within GFF4003 at 208.854 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.052 kb on + strand, within GFF4003 at 209.053 kb on - strand, within GFF4003 at 209.053 kb on - strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.112 kb on + strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.113 kb on - strand, within GFF4003 at 209.250 kb on + strand, within GFF4003 at 209.250 kb on + strand, within GFF4003 at 209.294 kb on + strand, within GFF4003
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 207,853 + GFF4002 0.51 -0.5 207,854 - GFF4002 0.51 -0.1 207,854 - GFF4002 0.51 +0.2 207,862 + GFF4002 0.51 -0.1 207,862 + GFF4002 0.51 -0.1 207,863 - GFF4002 0.51 +0.1 207,863 - GFF4002 0.51 -0.4 207,908 + GFF4002 0.54 +0.2 207,908 + GFF4002 0.54 -0.1 208,015 + GFF4002 0.61 +0.1 208,015 + GFF4002 0.61 -1.0 208,015 + GFF4002 0.61 +0.0 208,015 + GFF4002 0.61 -0.4 208,016 - GFF4002 0.61 +0.6 208,016 - GFF4002 0.61 -0.2 208,096 + GFF4002 0.67 +0.1 208,097 - GFF4002 0.67 +0.0 208,376 - GFF4002 0.85 -1.5 208,376 - GFF4002 0.85 +0.1 208,854 + GFF4003 0.26 -0.4 208,854 + GFF4003 0.26 -0.3 209,052 + GFF4003 0.50 -0.3 209,052 + GFF4003 0.50 +0.5 209,052 + GFF4003 0.50 +0.3 209,053 - GFF4003 0.50 -0.2 209,053 - GFF4003 0.50 -0.0 209,112 + GFF4003 0.57 +0.5 209,112 + GFF4003 0.57 +0.0 209,112 + GFF4003 0.57 +0.3 209,112 + GFF4003 0.57 +0.2 209,113 - GFF4003 0.57 -0.1 209,113 - GFF4003 0.57 +0.4 209,113 - GFF4003 0.57 +0.0 209,113 - GFF4003 0.57 -0.1 209,113 - GFF4003 0.57 -0.2 209,113 - GFF4003 0.57 +0.9 209,113 - GFF4003 0.57 +0.6 209,113 - GFF4003 0.57 +2.2 209,113 - GFF4003 0.57 +1.6 209,250 + GFF4003 0.74 -0.8 209,250 + GFF4003 0.74 -0.1 209,294 + GFF4003 0.79 -1.1
Or see this region's nucleotide sequence