Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3998 and GFF3999 are separated by 25 nucleotides GFF3999 and GFF4000 are separated by 206 nucleotides
GFF3998 - putative esterase, at 198,733 to 199,599
GFF3998
GFF3999 - GMP reductase (EC 1.7.1.7), at 199,625 to 200,602
GFF3999
GFF4000 - ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12), at 200,809 to 203,250
GFF4000
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.806 kb on - strand at 198.875 kb on - strand, within GFF3998 at 198.958 kb on + strand, within GFF3998 at 198.959 kb on - strand, within GFF3998 at 198.959 kb on - strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.059 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.292 kb on - strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.626 kb on + strand at 199.626 kb on + strand at 199.626 kb on + strand at 199.626 kb on + strand at 199.626 kb on + strand at 199.626 kb on + strand at 199.626 kb on + strand at 199.627 kb on - strand at 199.627 kb on - strand at 199.627 kb on - strand at 199.627 kb on - strand at 199.627 kb on - strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.671 kb on + strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.672 kb on - strand at 199.714 kb on - strand at 199.714 kb on - strand at 199.714 kb on - strand at 199.813 kb on - strand, within GFF3999 at 199.813 kb on - strand, within GFF3999 at 199.845 kb on + strand, within GFF3999 at 199.845 kb on + strand, within GFF3999 at 199.845 kb on + strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.846 kb on - strand, within GFF3999 at 199.848 kb on + strand, within GFF3999 at 199.848 kb on + strand, within GFF3999 at 199.849 kb on - strand, within GFF3999 at 199.849 kb on - strand, within GFF3999 at 199.849 kb on - strand, within GFF3999 at 199.849 kb on - strand, within GFF3999 at 200.212 kb on - strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.268 kb on + strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.269 kb on - strand, within GFF3999 at 200.313 kb on + strand, within GFF3999 at 200.313 kb on + strand, within GFF3999 at 200.314 kb on - strand, within GFF3999 at 200.314 kb on - strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.415 kb on + strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.416 kb on - strand, within GFF3999 at 200.421 kb on + strand, within GFF3999 at 200.421 kb on + strand, within GFF3999 at 200.422 kb on - strand, within GFF3999 at 200.422 kb on - strand, within GFF3999 at 200.422 kb on - strand, within GFF3999 at 200.422 kb on - strand, within GFF3999 at 200.422 kb on - strand, within GFF3999 at 200.586 kb on + strand at 200.586 kb on + strand at 200.587 kb on - strand at 200.587 kb on - strand at 200.587 kb on - strand at 200.735 kb on + strand at 200.772 kb on + strand at 200.772 kb on + strand at 200.772 kb on + strand at 200.772 kb on + strand at 200.772 kb on + strand at 200.773 kb on - strand at 200.783 kb on + strand at 200.784 kb on - strand at 201.376 kb on + strand, within GFF4000 at 201.436 kb on + strand, within GFF4000 at 201.475 kb on + strand, within GFF4000 at 201.476 kb on - strand, within GFF4000 at 201.476 kb on - strand, within GFF4000 at 201.536 kb on - strand, within GFF4000
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 198,633 + -0.7 198,633 + +0.0 198,633 + +1.6 198,633 + -2.3 198,633 + +0.0 198,633 + -0.1 198,634 - -1.1 198,634 - +1.6 198,634 - -0.5 198,634 - +0.0 198,634 - +0.3 198,634 - +0.3 198,742 + -0.3 198,742 + -0.5 198,742 + +1.3 198,742 + +0.6 198,742 + -0.5 198,743 - -1.0 198,743 - -0.6 198,743 - -0.3 198,743 - -0.2 198,743 - +0.3 198,769 + +0.4 198,769 + +0.0 198,769 + +0.7 198,769 + +0.1 198,769 + -0.7 198,769 + -0.5 198,769 + -0.0 198,769 + -0.9 198,769 + -0.1 198,769 + -0.4 198,769 + -1.2 198,769 + -0.5 198,769 + -0.3 198,769 + -0.5 198,769 + -0.3 198,769 + -0.1 198,769 + -0.6 198,769 + +0.0 198,769 + -0.7 198,770 - +0.3 198,770 - +0.6 198,770 - -0.1 198,770 - +0.3 198,770 - +0.0 198,770 - -0.8 198,770 - -1.4 198,770 - -0.3 198,770 - -0.2 198,770 - -0.5 198,770 - -0.5 198,770 - -0.4 198,806 - -1.0 198,875 - GFF3998 0.16 -0.6 198,958 + GFF3998 0.26 -0.2 198,959 - GFF3998 0.26 -1.0 198,959 - GFF3998 0.26 -0.8 199,042 + GFF3998 0.36 -0.5 199,042 + GFF3998 0.36 -0.4 199,042 + GFF3998 0.36 +0.4 199,042 + GFF3998 0.36 +0.2 199,043 - GFF3998 0.36 +0.4 199,043 - GFF3998 0.36 -0.8 199,043 - GFF3998 0.36 -1.0 199,043 - GFF3998 0.36 +0.4 199,043 - GFF3998 0.36 +0.1 199,059 + GFF3998 0.38 -0.2 199,144 + GFF3998 0.47 -1.1 199,144 + GFF3998 0.47 -0.1 199,144 + GFF3998 0.47 -0.6 199,144 + GFF3998 0.47 -0.7 199,144 + GFF3998 0.47 -0.2 199,144 + GFF3998 0.47 +0.6 199,145 - GFF3998 0.48 +0.5 199,145 - GFF3998 0.48 -0.6 199,145 - GFF3998 0.48 +0.5 199,145 - GFF3998 0.48 +0.7 199,145 - GFF3998 0.48 +0.7 199,145 - GFF3998 0.48 -0.4 199,292 - GFF3998 0.64 -0.6 199,408 + GFF3998 0.78 -0.3 199,408 + GFF3998 0.78 -0.4 199,408 + GFF3998 0.78 +0.0 199,408 + GFF3998 0.78 -0.0 199,408 + GFF3998 0.78 -0.3 199,408 + GFF3998 0.78 -0.2 199,408 + GFF3998 0.78 -0.3 199,408 + GFF3998 0.78 -0.3 199,408 + GFF3998 0.78 +1.6 199,409 - GFF3998 0.78 +0.3 199,409 - GFF3998 0.78 -0.5 199,409 - GFF3998 0.78 -0.2 199,409 - GFF3998 0.78 +0.0 199,409 - GFF3998 0.78 -0.4 199,409 - GFF3998 0.78 -0.7 199,409 - GFF3998 0.78 -0.4 199,409 - GFF3998 0.78 -0.5 199,409 - GFF3998 0.78 +0.8 199,409 - GFF3998 0.78 -0.9 199,409 - GFF3998 0.78 -1.2 199,626 + +0.9 199,626 + -0.6 199,626 + -1.0 199,626 + +0.2 199,626 + -0.4 199,626 + -0.3 199,626 + -0.3 199,627 - +1.6 199,627 - -0.7 199,627 - +0.3 199,627 - -0.5 199,627 - -0.8 199,671 + +0.5 199,671 + +0.5 199,671 + -0.5 199,671 + +0.3 199,671 + +0.0 199,671 + -0.6 199,671 + +0.1 199,672 - -0.6 199,672 - -0.1 199,672 - -0.3 199,672 - -1.2 199,672 - -0.3 199,672 - -0.1 199,672 - +0.1 199,714 - -0.7 199,714 - +0.0 199,714 - -1.1 199,813 - GFF3999 0.19 +0.8 199,813 - GFF3999 0.19 -0.3 199,845 + GFF3999 0.22 -0.2 199,845 + GFF3999 0.22 +0.9 199,845 + GFF3999 0.22 -0.5 199,846 - GFF3999 0.23 +0.2 199,846 - GFF3999 0.23 +1.0 199,846 - GFF3999 0.23 +0.5 199,846 - GFF3999 0.23 -0.7 199,846 - GFF3999 0.23 +0.2 199,846 - GFF3999 0.23 -0.2 199,846 - GFF3999 0.23 -0.3 199,848 + GFF3999 0.23 -1.1 199,848 + GFF3999 0.23 +0.2 199,849 - GFF3999 0.23 -0.8 199,849 - GFF3999 0.23 -0.2 199,849 - GFF3999 0.23 +0.6 199,849 - GFF3999 0.23 -0.9 200,212 - GFF3999 0.60 +1.0 200,268 + GFF3999 0.66 +0.2 200,268 + GFF3999 0.66 -0.0 200,268 + GFF3999 0.66 -0.9 200,268 + GFF3999 0.66 -0.7 200,268 + GFF3999 0.66 -0.4 200,268 + GFF3999 0.66 -0.3 200,269 - GFF3999 0.66 +0.2 200,269 - GFF3999 0.66 +0.5 200,269 - GFF3999 0.66 +0.2 200,269 - GFF3999 0.66 +0.2 200,269 - GFF3999 0.66 -0.4 200,269 - GFF3999 0.66 +0.2 200,269 - GFF3999 0.66 -1.4 200,269 - GFF3999 0.66 -0.1 200,313 + GFF3999 0.70 -0.3 200,313 + GFF3999 0.70 -0.1 200,314 - GFF3999 0.70 -1.2 200,314 - GFF3999 0.70 +0.4 200,415 + GFF3999 0.81 +0.8 200,415 + GFF3999 0.81 -0.5 200,415 + GFF3999 0.81 +0.6 200,415 + GFF3999 0.81 -1.7 200,415 + GFF3999 0.81 +0.7 200,415 + GFF3999 0.81 -0.7 200,415 + GFF3999 0.81 +1.6 200,415 + GFF3999 0.81 +1.0 200,415 + GFF3999 0.81 -1.0 200,415 + GFF3999 0.81 -0.8 200,416 - GFF3999 0.81 -0.2 200,416 - GFF3999 0.81 -0.9 200,416 - GFF3999 0.81 +0.6 200,416 - GFF3999 0.81 +0.2 200,416 - GFF3999 0.81 -0.5 200,416 - GFF3999 0.81 +1.6 200,416 - GFF3999 0.81 -0.9 200,421 + GFF3999 0.81 +0.1 200,421 + GFF3999 0.81 +1.0 200,422 - GFF3999 0.81 -0.6 200,422 - GFF3999 0.81 +0.2 200,422 - GFF3999 0.81 -0.6 200,422 - GFF3999 0.81 +0.1 200,422 - GFF3999 0.81 +0.9 200,586 + +0.9 200,586 + -0.1 200,587 - +0.2 200,587 - +0.8 200,587 - +0.1 200,735 + +0.2 200,772 + +0.2 200,772 + -0.2 200,772 + -0.1 200,772 + -0.0 200,772 + +0.4 200,773 - -0.3 200,783 + -0.6 200,784 - -0.8 201,376 + GFF4000 0.23 -2.1 201,436 + GFF4000 0.26 -0.9 201,475 + GFF4000 0.27 -1.7 201,476 - GFF4000 0.27 -1.9 201,476 - GFF4000 0.27 -0.2 201,536 - GFF4000 0.30 -1.0
Or see this region's nucleotide sequence