Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3969 and GFF3970 are separated by 20 nucleotides GFF3970 and GFF3971 overlap by 1 nucleotides GFF3971 and GFF3972 are separated by 14 nucleotides
GFF3969 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 171,688 to 172,680
GFF3969
GFF3970 - Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13), at 172,701 to 174,014
GFF3970
GFF3971 - Aromatic-ring-hydroxylating dioxygenase, beta subunit (EC 1.14.12.3), at 174,014 to 174,505
GFF3971
GFF3972 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 174,520 to 176,148
GFF3972
Position (kb) 172
173
174
175 Strain fitness (log2 ratio) -1
0
1 at 171.919 kb on + strand, within GFF3969 at 171.919 kb on + strand, within GFF3969 at 172.294 kb on + strand, within GFF3969 at 172.634 kb on + strand at 172.634 kb on + strand at 172.635 kb on - strand at 172.710 kb on + strand at 172.773 kb on + strand at 172.774 kb on - strand at 173.082 kb on + strand, within GFF3970 at 173.206 kb on - strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.547 kb on + strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.548 kb on - strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.784 kb on + strand, within GFF3970 at 173.785 kb on - strand, within GFF3970 at 174.387 kb on - strand, within GFF3971 at 174.700 kb on + strand, within GFF3972
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 171,919 + GFF3969 0.23 +1.6 171,919 + GFF3969 0.23 -1.7 172,294 + GFF3969 0.61 +0.4 172,634 + +1.0 172,634 + -0.2 172,635 - +0.0 172,710 + -0.5 172,773 + -0.1 172,774 - +0.9 173,082 + GFF3970 0.29 +0.0 173,206 - GFF3970 0.38 +0.5 173,547 + GFF3970 0.64 +0.5 173,547 + GFF3970 0.64 +0.3 173,548 - GFF3970 0.64 +1.0 173,548 - GFF3970 0.64 -0.3 173,784 + GFF3970 0.82 -0.2 173,784 + GFF3970 0.82 +0.1 173,784 + GFF3970 0.82 +1.0 173,784 + GFF3970 0.82 +0.0 173,785 - GFF3970 0.82 +0.1 174,387 - GFF3971 0.76 +0.1 174,700 + GFF3972 0.11 -0.6
Or see this region's nucleotide sequence