Strain Fitness in Variovorax sp. SCN45 around GFF3922

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3920 and GFF3921 are separated by 100 nucleotidesGFF3921 and GFF3922 overlap by 4 nucleotidesGFF3922 and GFF3923 are separated by 10 nucleotidesGFF3923 and GFF3924 are separated by 77 nucleotides GFF3920 - FIG00467295: hypothetical protein, at 125,879 to 127,129 GFF3920 GFF3921 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 127,230 to 128,090 GFF3921 GFF3922 - Kynureninase (EC 3.7.1.3), at 128,087 to 129,364 GFF3922 GFF3923 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 129,375 to 130,025 GFF3923 GFF3924 - Ferredoxin, at 130,103 to 130,417 GFF3924 Position (kb) 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 127.160 kb on - strandat 127.232 kb on - strandat 127.294 kb on + strandat 127.294 kb on + strandat 127.294 kb on + strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.295 kb on - strandat 127.420 kb on + strand, within GFF3921at 127.420 kb on + strand, within GFF3921at 127.420 kb on + strand, within GFF3921at 127.421 kb on - strand, within GFF3921at 127.451 kb on - strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.452 kb on + strand, within GFF3921at 127.453 kb on - strand, within GFF3921at 127.453 kb on - strand, within GFF3921at 127.492 kb on + strand, within GFF3921at 127.493 kb on - strand, within GFF3921at 127.591 kb on + strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.724 kb on - strand, within GFF3921at 127.741 kb on + strand, within GFF3921at 127.741 kb on + strand, within GFF3921at 127.742 kb on - strand, within GFF3921at 127.994 kb on - strand, within GFF3921at 127.994 kb on - strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.002 kb on + strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.003 kb on - strand, within GFF3921at 128.162 kb on + strandat 128.163 kb on - strandat 128.163 kb on - strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.193 kb on + strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.194 kb on - strandat 128.250 kb on + strand, within GFF3922at 128.295 kb on + strand, within GFF3922at 128.295 kb on + strand, within GFF3922at 128.296 kb on - strand, within GFF3922at 128.296 kb on - strand, within GFF3922at 128.321 kb on + strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.322 kb on - strand, within GFF3922at 128.547 kb on + strand, within GFF3922at 128.548 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.575 kb on - strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.697 kb on + strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.698 kb on - strand, within GFF3922at 128.703 kb on + strand, within GFF3922at 128.704 kb on - strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.721 kb on + strand, within GFF3922at 128.853 kb on + strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.854 kb on - strand, within GFF3922at 128.970 kb on + strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 128.971 kb on - strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.060 kb on + strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.061 kb on - strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.092 kb on + strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.093 kb on - strand, within GFF3922at 129.273 kb on + strandat 129.274 kb on - strandat 129.396 kb on + strandat 129.396 kb on + strandat 129.396 kb on + strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.397 kb on - strandat 129.457 kb on + strand, within GFF3923at 129.457 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.676 kb on + strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.677 kb on - strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.680 kb on + strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.681 kb on - strand, within GFF3923at 129.835 kb on + strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.836 kb on - strand, within GFF3923at 129.940 kb on + strand, within GFF3923at 129.941 kb on - strand, within GFF3923at 129.941 kb on - strand, within GFF3923at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.206 kb on + strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924at 130.207 kb on - strand, within GFF3924

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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127,160 - -1.4
127,232 - -0.1
127,294 + -0.9
127,294 + +0.1
127,294 + -0.8
127,295 - -0.1
127,295 - -0.0
127,295 - -0.1
127,295 - +0.3
127,295 - +0.2
127,295 - +1.5
127,295 - -0.9
127,420 + GFF3921 0.22 -0.3
127,420 + GFF3921 0.22 -0.1
127,420 + GFF3921 0.22 -0.0
127,421 - GFF3921 0.22 -0.9
127,451 - GFF3921 0.26 -0.2
127,452 + GFF3921 0.26 +1.6
127,452 + GFF3921 0.26 -0.8
127,452 + GFF3921 0.26 -0.3
127,452 + GFF3921 0.26 -1.4
127,453 - GFF3921 0.26 -0.5
127,453 - GFF3921 0.26 -0.2
127,492 + GFF3921 0.30 +1.3
127,493 - GFF3921 0.31 +0.6
127,591 + GFF3921 0.42 +0.6
127,724 - GFF3921 0.57 -0.1
127,724 - GFF3921 0.57 -0.2
127,724 - GFF3921 0.57 +0.3
127,741 + GFF3921 0.59 +0.3
127,741 + GFF3921 0.59 -1.6
127,742 - GFF3921 0.59 -0.4
127,994 - GFF3921 0.89 -0.4
127,994 - GFF3921 0.89 +0.4
128,002 + GFF3921 0.90 +1.8
128,002 + GFF3921 0.90 -0.5
128,002 + GFF3921 0.90 +0.0
128,002 + GFF3921 0.90 +0.0
128,003 - GFF3921 0.90 +1.2
128,003 - GFF3921 0.90 +0.4
128,003 - GFF3921 0.90 +0.6
128,003 - GFF3921 0.90 -0.3
128,003 - GFF3921 0.90 -0.7
128,162 + +0.1
128,163 - -0.6
128,163 - +0.1
128,193 + +1.2
128,193 + -0.3
128,193 + +0.0
128,193 + -0.6
128,193 + -0.5
128,193 + -0.1
128,193 + -1.0
128,194 - +0.2
128,194 - +1.6
128,194 - -0.1
128,194 - -0.8
128,250 + GFF3922 0.13 +1.2
128,295 + GFF3922 0.16 -0.4
128,295 + GFF3922 0.16 +1.3
128,296 - GFF3922 0.16 -1.2
128,296 - GFF3922 0.16 +0.1
128,321 + GFF3922 0.18 +0.1
128,322 - GFF3922 0.18 -0.3
128,322 - GFF3922 0.18 -0.3
128,322 - GFF3922 0.18 +0.7
128,322 - GFF3922 0.18 -0.9
128,547 + GFF3922 0.36 -0.4
128,548 - GFF3922 0.36 +0.3
128,575 - GFF3922 0.38 -1.2
128,575 - GFF3922 0.38 -0.1
128,697 + GFF3922 0.48 +0.2
128,697 + GFF3922 0.48 -0.1
128,697 + GFF3922 0.48 +0.1
128,697 + GFF3922 0.48 +0.6
128,697 + GFF3922 0.48 +0.2
128,698 - GFF3922 0.48 +0.5
128,698 - GFF3922 0.48 +1.9
128,698 - GFF3922 0.48 +0.2
128,698 - GFF3922 0.48 +0.6
128,698 - GFF3922 0.48 -1.4
128,703 + GFF3922 0.48 -2.1
128,704 - GFF3922 0.48 -0.7
128,721 + GFF3922 0.50 -0.4
128,721 + GFF3922 0.50 -2.3
128,721 + GFF3922 0.50 -0.2
128,721 + GFF3922 0.50 +0.4
128,853 + GFF3922 0.60 -0.4
128,854 - GFF3922 0.60 -0.4
128,854 - GFF3922 0.60 -0.7
128,970 + GFF3922 0.69 -0.1
128,971 - GFF3922 0.69 -1.4
128,971 - GFF3922 0.69 +0.0
128,971 - GFF3922 0.69 +0.1
128,971 - GFF3922 0.69 +0.3
129,060 + GFF3922 0.76 -0.1
129,060 + GFF3922 0.76 +0.5
129,060 + GFF3922 0.76 +2.0
129,060 + GFF3922 0.76 -0.5
129,060 + GFF3922 0.76 +0.1
129,060 + GFF3922 0.76 +0.8
129,061 - GFF3922 0.76 +0.1
129,061 - GFF3922 0.76 +0.5
129,061 - GFF3922 0.76 -0.1
129,092 + GFF3922 0.79 -2.1
129,092 + GFF3922 0.79 +0.6
129,092 + GFF3922 0.79 -0.4
129,092 + GFF3922 0.79 +0.2
129,092 + GFF3922 0.79 -0.7
129,092 + GFF3922 0.79 +0.0
129,092 + GFF3922 0.79 +0.7
129,092 + GFF3922 0.79 +0.0
129,093 - GFF3922 0.79 -0.3
129,093 - GFF3922 0.79 -0.2
129,093 - GFF3922 0.79 -0.4
129,273 + -0.3
129,274 - -1.4
129,396 + +0.7
129,396 + +0.5
129,396 + -0.9
129,397 - -0.4
129,397 - -0.2
129,397 - +1.0
129,397 - -0.8
129,457 + GFF3923 0.13 +0.3
129,457 + GFF3923 0.13 -0.1
129,676 + GFF3923 0.46 -0.7
129,676 + GFF3923 0.46 +0.4
129,676 + GFF3923 0.46 -0.6
129,676 + GFF3923 0.46 +0.1
129,676 + GFF3923 0.46 -0.6
129,676 + GFF3923 0.46 -0.4
129,676 + GFF3923 0.46 +0.3
129,676 + GFF3923 0.46 -0.7
129,676 + GFF3923 0.46 -0.3
129,676 + GFF3923 0.46 +2.0
129,676 + GFF3923 0.46 -1.2
129,677 - GFF3923 0.46 +0.7
129,677 - GFF3923 0.46 +2.6
129,677 - GFF3923 0.46 +0.1
129,677 - GFF3923 0.46 -1.5
129,677 - GFF3923 0.46 -0.1
129,677 - GFF3923 0.46 -1.0
129,677 - GFF3923 0.46 +0.2
129,677 - GFF3923 0.46 -0.3
129,680 + GFF3923 0.47 +0.0
129,680 + GFF3923 0.47 -0.1
129,680 + GFF3923 0.47 +0.0
129,680 + GFF3923 0.47 +0.0
129,680 + GFF3923 0.47 -0.2
129,680 + GFF3923 0.47 -0.7
129,680 + GFF3923 0.47 -0.2
129,681 - GFF3923 0.47 -0.8
129,681 - GFF3923 0.47 -0.3
129,681 - GFF3923 0.47 +1.3
129,835 + GFF3923 0.71 +0.4
129,836 - GFF3923 0.71 -0.4
129,836 - GFF3923 0.71 -0.5
129,836 - GFF3923 0.71 +0.6
129,836 - GFF3923 0.71 -0.2
129,836 - GFF3923 0.71 +1.6
129,940 + GFF3923 0.87 -1.0
129,941 - GFF3923 0.87 +0.2
129,941 - GFF3923 0.87 -0.3
130,206 + GFF3924 0.33 +0.3
130,206 + GFF3924 0.33 +0.1
130,206 + GFF3924 0.33 +1.0
130,206 + GFF3924 0.33 -0.1
130,206 + GFF3924 0.33 -0.4
130,206 + GFF3924 0.33 -0.4
130,206 + GFF3924 0.33 +1.3
130,206 + GFF3924 0.33 +0.8
130,207 - GFF3924 0.33 +0.0
130,207 - GFF3924 0.33 +0.2
130,207 - GFF3924 0.33 +0.4
130,207 - GFF3924 0.33 -1.0
130,207 - GFF3924 0.33 +0.0
130,207 - GFF3924 0.33 -0.9
130,207 - GFF3924 0.33 +0.5
130,207 - GFF3924 0.33 +0.0
130,207 - GFF3924 0.33 -0.6
130,207 - GFF3924 0.33 +0.0
130,207 - GFF3924 0.33 +0.0
130,207 - GFF3924 0.33 +0.8

Or see this region's nucleotide sequence