Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3871 and GFF3872 are separated by 136 nucleotides GFF3872 and GFF3873 overlap by 4 nucleotides GFF3873 and GFF3874 are separated by 13 nucleotides
GFF3871 - GTP-binding protein Era, at 69,204 to 70,169
GFF3871
GFF3872 - DNA recombination and repair protein RecO, at 70,306 to 71,076
GFF3872
GFF3873 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 71,073 to 71,834
GFF3873
GFF3874 - Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7), at 71,848 to 72,240
GFF3874
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.162 kb on - strand at 70.167 kb on + strand at 70.168 kb on - strand at 70.168 kb on - strand at 70.294 kb on + strand at 70.294 kb on + strand at 70.295 kb on - strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.339 kb on + strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.340 kb on - strand at 70.354 kb on + strand at 70.355 kb on - strand at 70.495 kb on + strand, within GFF3872 at 70.495 kb on + strand, within GFF3872 at 70.495 kb on + strand, within GFF3872 at 70.495 kb on + strand, within GFF3872 at 70.495 kb on + strand, within GFF3872 at 70.496 kb on - strand, within GFF3872 at 70.496 kb on - strand, within GFF3872 at 70.496 kb on - strand, within GFF3872 at 70.496 kb on - strand, within GFF3872 at 70.585 kb on + strand, within GFF3872 at 70.585 kb on + strand, within GFF3872 at 70.585 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.588 kb on + strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.589 kb on - strand, within GFF3872 at 70.654 kb on + strand, within GFF3872 at 70.654 kb on + strand, within GFF3872 at 70.654 kb on + strand, within GFF3872 at 70.655 kb on - strand, within GFF3872 at 70.655 kb on - strand, within GFF3872 at 70.822 kb on + strand, within GFF3872 at 70.823 kb on - strand, within GFF3872 at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.014 kb on + strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.015 kb on - strand at 71.040 kb on + strand at 71.040 kb on + strand at 71.041 kb on - strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.072 kb on + strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.073 kb on - strand at 71.854 kb on + strand at 71.854 kb on + strand at 71.854 kb on + strand at 71.855 kb on - strand at 71.856 kb on - strand at 72.004 kb on + strand, within GFF3874 at 72.004 kb on + strand, within GFF3874 at 72.005 kb on - strand, within GFF3874 at 72.005 kb on - strand, within GFF3874
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 70,162 - -0.4 70,167 + +0.1 70,168 - +1.2 70,168 - +1.0 70,294 + +0.2 70,294 + -0.4 70,295 - -0.1 70,339 + +0.5 70,339 + +0.0 70,339 + +1.1 70,339 + -2.7 70,339 + -0.7 70,339 + -0.9 70,339 + -0.2 70,339 + +0.4 70,339 + +0.5 70,339 + +1.4 70,339 + -0.1 70,339 + -1.2 70,339 + +1.6 70,339 + -0.5 70,339 + +1.4 70,339 + -1.8 70,339 + -0.4 70,339 + +0.3 70,340 - -0.9 70,340 - -0.4 70,340 - -0.5 70,340 - -1.6 70,340 - +0.4 70,340 - +0.0 70,340 - +0.2 70,340 - -1.7 70,340 - -2.5 70,340 - +0.2 70,354 + -0.2 70,355 - -0.6 70,495 + GFF3872 0.25 -1.0 70,495 + GFF3872 0.25 +0.1 70,495 + GFF3872 0.25 +0.3 70,495 + GFF3872 0.25 -0.2 70,495 + GFF3872 0.25 +0.5 70,496 - GFF3872 0.25 +0.8 70,496 - GFF3872 0.25 -0.7 70,496 - GFF3872 0.25 +0.6 70,496 - GFF3872 0.25 -0.4 70,585 + GFF3872 0.36 -0.3 70,585 + GFF3872 0.36 +0.5 70,585 + GFF3872 0.36 +0.3 70,588 + GFF3872 0.37 -1.2 70,588 + GFF3872 0.37 +0.9 70,588 + GFF3872 0.37 -0.3 70,588 + GFF3872 0.37 +0.0 70,588 + GFF3872 0.37 -0.9 70,588 + GFF3872 0.37 +0.7 70,588 + GFF3872 0.37 -0.4 70,588 + GFF3872 0.37 +0.1 70,588 + GFF3872 0.37 +1.2 70,588 + GFF3872 0.37 +0.6 70,588 + GFF3872 0.37 +0.2 70,588 + GFF3872 0.37 +0.0 70,588 + GFF3872 0.37 +0.4 70,588 + GFF3872 0.37 -0.7 70,588 + GFF3872 0.37 +0.1 70,588 + GFF3872 0.37 -0.7 70,588 + GFF3872 0.37 -0.1 70,588 + GFF3872 0.37 +0.9 70,588 + GFF3872 0.37 +0.0 70,589 - GFF3872 0.37 +0.1 70,589 - GFF3872 0.37 -0.7 70,589 - GFF3872 0.37 -2.0 70,589 - GFF3872 0.37 +0.6 70,589 - GFF3872 0.37 +1.3 70,589 - GFF3872 0.37 -0.2 70,589 - GFF3872 0.37 -0.0 70,589 - GFF3872 0.37 +0.0 70,589 - GFF3872 0.37 -1.4 70,654 + GFF3872 0.45 +0.6 70,654 + GFF3872 0.45 -0.2 70,654 + GFF3872 0.45 -0.2 70,655 - GFF3872 0.45 +0.3 70,655 - GFF3872 0.45 +0.6 70,822 + GFF3872 0.67 +0.1 70,823 - GFF3872 0.67 +0.5 71,014 + -0.2 71,014 + +0.0 71,014 + -0.4 71,014 + +0.1 71,014 + +1.9 71,014 + -2.2 71,014 + -0.9 71,015 - +0.5 71,015 - +0.2 71,015 - -0.4 71,015 - +0.2 71,015 - -0.2 71,015 - -0.3 71,015 - -0.1 71,015 - +0.1 71,015 - -0.2 71,040 + +0.5 71,040 + -1.6 71,041 - -0.1 71,072 + +0.4 71,072 + +0.0 71,072 + -0.1 71,072 + -0.1 71,072 + +0.6 71,072 + -0.4 71,072 + -0.1 71,072 + -0.2 71,073 - -0.9 71,073 - -0.1 71,073 - +1.0 71,073 - +0.3 71,073 - -0.4 71,073 - +0.7 71,854 + -1.1 71,854 + -0.6 71,854 + -0.4 71,855 - -0.2 71,856 - +0.6 72,004 + GFF3874 0.40 +0.6 72,004 + GFF3874 0.40 -0.7 72,005 - GFF3874 0.40 -1.1 72,005 - GFF3874 0.40 +0.4
Or see this region's nucleotide sequence