Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3863 and GFF3864 are separated by 17 nucleotides GFF3864 and GFF3865 are separated by 174 nucleotides GFF3865 and GFF3866 are separated by 109 nucleotides
GFF3863 - RNA polymerase sigma factor RpoE, at 60,703 to 61,380
GFF3863
GFF3864 - Sigma factor RpoE negative regulatory protein RseA, at 61,398 to 62,075
GFF3864
GFF3865 - Sigma factor RpoE negative regulatory protein RseB precursor, at 62,250 to 63,191
GFF3865
GFF3866 - HtrA protease/chaperone protein, at 63,301 to 64,782
GFF3866
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.252 kb on + strand, within GFF3863 at 61.252 kb on + strand, within GFF3863 at 61.252 kb on + strand, within GFF3863 at 61.252 kb on + strand, within GFF3863 at 61.252 kb on + strand, within GFF3863 at 61.252 kb on + strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.253 kb on - strand, within GFF3863 at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.378 kb on + strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.379 kb on - strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.527 kb on + strand, within GFF3864 at 61.527 kb on + strand, within GFF3864 at 61.527 kb on + strand, within GFF3864 at 61.527 kb on + strand, within GFF3864 at 61.527 kb on + strand, within GFF3864 at 61.527 kb on + strand, within GFF3864 at 61.528 kb on - strand, within GFF3864 at 61.528 kb on - strand, within GFF3864 at 61.528 kb on - strand, within GFF3864 at 61.528 kb on - strand, within GFF3864 at 61.714 kb on + strand, within GFF3864 at 61.715 kb on - strand, within GFF3864 at 61.715 kb on - strand, within GFF3864 at 61.715 kb on - strand, within GFF3864 at 62.087 kb on + strand at 62.087 kb on + strand at 62.087 kb on + strand at 62.101 kb on + strand at 62.101 kb on + strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.304 kb on + strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.305 kb on - strand at 62.556 kb on + strand, within GFF3865 at 62.557 kb on - strand, within GFF3865 at 62.557 kb on - strand, within GFF3865 at 62.557 kb on - strand, within GFF3865 at 62.805 kb on + strand, within GFF3865 at 63.024 kb on + strand, within GFF3865 at 63.024 kb on + strand, within GFF3865 at 63.024 kb on + strand, within GFF3865 at 63.025 kb on - strand, within GFF3865 at 63.256 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on + strand at 63.257 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.258 kb on - strand at 63.271 kb on + strand at 63.670 kb on + strand, within GFF3866 at 63.670 kb on + strand, within GFF3866 at 63.670 kb on + strand, within GFF3866 at 63.670 kb on + strand, within GFF3866 at 63.670 kb on + strand, within GFF3866 at 63.670 kb on + strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.671 kb on - strand, within GFF3866 at 63.788 kb on + strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.789 kb on - strand, within GFF3866 at 63.834 kb on + strand, within GFF3866 at 63.834 kb on + strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.835 kb on - strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.946 kb on + strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 63.947 kb on - strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.048 kb on + strand, within GFF3866 at 64.049 kb on - strand, within GFF3866 at 64.049 kb on - strand, within GFF3866 at 64.049 kb on - strand, within GFF3866 at 64.049 kb on - strand, within GFF3866 at 64.049 kb on - strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.128 kb on + strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.129 kb on - strand, within GFF3866 at 64.178 kb on + strand, within GFF3866 at 64.179 kb on - strand, within GFF3866 at 64.179 kb on - strand, within GFF3866 at 64.179 kb on - strand, within GFF3866
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,252 + GFF3863 0.81 -0.6 61,252 + GFF3863 0.81 -0.8 61,252 + GFF3863 0.81 -0.7 61,252 + GFF3863 0.81 -0.8 61,252 + GFF3863 0.81 -0.6 61,252 + GFF3863 0.81 -0.2 61,253 - GFF3863 0.81 -0.9 61,253 - GFF3863 0.81 -1.4 61,253 - GFF3863 0.81 +1.3 61,253 - GFF3863 0.81 -0.6 61,253 - GFF3863 0.81 -0.3 61,253 - GFF3863 0.81 -0.0 61,253 - GFF3863 0.81 -0.3 61,378 + -0.2 61,378 + +0.0 61,378 + +1.0 61,378 + -0.7 61,378 + -0.1 61,378 + +0.2 61,378 + +0.4 61,378 + +0.1 61,378 + +0.0 61,378 + +0.1 61,378 + -0.4 61,378 + -0.3 61,379 - -0.5 61,379 - -1.1 61,379 - -0.6 61,379 - +0.4 61,379 - -1.6 61,379 - +0.6 61,379 - -1.0 61,379 - -1.2 61,379 - -0.6 61,379 - -1.9 61,379 - +0.2 61,382 + -0.3 61,382 + -0.1 61,382 + -0.4 61,382 + +0.5 61,382 + +0.5 61,382 + +0.6 61,382 + +0.9 61,382 + +0.0 61,382 + +0.6 61,382 + -0.4 61,382 + +0.5 61,382 + -0.8 61,382 + -0.6 61,382 + +0.5 61,382 + +0.4 61,382 + +0.0 61,382 + +1.3 61,382 + -0.4 61,382 + -0.9 61,382 + -0.9 61,382 + +0.0 61,383 - +0.3 61,383 - -0.4 61,383 - -0.6 61,383 - -0.8 61,383 - -1.0 61,383 - -0.3 61,383 - +0.5 61,383 - -2.3 61,383 - +0.0 61,383 - -0.3 61,383 - -2.1 61,383 - -0.5 61,383 - +0.2 61,383 - -0.9 61,383 - -2.2 61,383 - +0.2 61,383 - +0.0 61,383 - -1.1 61,383 - -0.6 61,383 - +0.2 61,383 - -0.9 61,383 - -1.2 61,383 - -2.0 61,383 - -0.7 61,383 - -1.2 61,383 - +0.3 61,383 - -1.2 61,383 - -0.5 61,383 - -1.7 61,527 + GFF3864 0.19 -0.6 61,527 + GFF3864 0.19 -0.8 61,527 + GFF3864 0.19 -1.4 61,527 + GFF3864 0.19 -0.8 61,527 + GFF3864 0.19 -0.7 61,527 + GFF3864 0.19 -0.9 61,528 - GFF3864 0.19 -2.5 61,528 - GFF3864 0.19 -1.3 61,528 - GFF3864 0.19 +1.1 61,528 - GFF3864 0.19 -0.7 61,714 + GFF3864 0.47 -0.1 61,715 - GFF3864 0.47 -1.2 61,715 - GFF3864 0.47 -0.3 61,715 - GFF3864 0.47 -0.5 62,087 + +0.6 62,087 + -1.1 62,087 + -0.4 62,101 + +0.6 62,101 + -0.7 62,102 - -0.2 62,102 - +0.0 62,102 - +0.6 62,102 - +0.2 62,304 + -0.9 62,304 + -0.4 62,304 + -0.3 62,304 + -0.9 62,304 + -0.7 62,304 + -0.9 62,304 + -3.4 62,304 + -1.5 62,304 + -1.4 62,304 + -0.1 62,304 + -0.4 62,304 + -0.3 62,304 + -1.5 62,304 + -0.4 62,304 + +0.6 62,304 + -0.9 62,305 - +1.2 62,305 - -0.2 62,305 - +0.0 62,305 - -2.3 62,305 - -0.3 62,305 - -1.1 62,305 - -0.2 62,305 - -1.3 62,305 - -0.6 62,305 - -0.6 62,305 - -0.2 62,305 - -0.4 62,305 - -0.6 62,305 - -1.0 62,305 - -0.9 62,305 - -1.2 62,305 - -0.9 62,556 + GFF3865 0.32 +0.6 62,557 - GFF3865 0.33 -0.9 62,557 - GFF3865 0.33 -1.0 62,557 - GFF3865 0.33 -1.1 62,805 + GFF3865 0.59 -1.5 63,024 + GFF3865 0.82 +0.1 63,024 + GFF3865 0.82 -1.3 63,024 + GFF3865 0.82 -1.1 63,025 - GFF3865 0.82 +0.6 63,256 + +0.3 63,257 + -0.7 63,257 + +0.2 63,257 + -0.4 63,257 + -0.3 63,257 + +0.5 63,257 + +0.6 63,257 + -0.4 63,257 + -0.9 63,257 + +0.6 63,257 + +0.0 63,257 + +0.2 63,257 + -0.8 63,257 + -0.7 63,257 + +1.0 63,257 + -0.7 63,257 + +0.0 63,257 + -0.3 63,257 + -0.7 63,257 + +0.6 63,257 + +1.0 63,257 + -0.7 63,257 + -0.4 63,257 + +0.2 63,257 + -0.2 63,257 + -0.4 63,257 + +0.1 63,257 + +0.1 63,257 - +1.6 63,258 - -0.1 63,258 - -1.0 63,258 - -0.4 63,258 - +0.5 63,258 - +1.2 63,258 - -0.3 63,258 - -0.9 63,258 - +0.7 63,258 - +0.0 63,258 - -0.1 63,258 - +0.1 63,258 - +0.6 63,258 - +0.1 63,258 - -0.3 63,258 - -0.3 63,258 - -0.1 63,258 - -0.7 63,258 - -0.3 63,258 - -1.1 63,258 - +0.2 63,258 - -0.1 63,258 - +0.6 63,258 - -0.3 63,258 - +0.1 63,258 - -0.8 63,258 - -1.4 63,258 - +0.2 63,258 - -0.7 63,258 - +1.2 63,258 - -0.4 63,271 + -0.1 63,670 + GFF3866 0.25 -1.6 63,670 + GFF3866 0.25 -0.3 63,670 + GFF3866 0.25 -0.1 63,670 + GFF3866 0.25 -1.7 63,670 + GFF3866 0.25 +2.0 63,670 + GFF3866 0.25 +0.0 63,671 - GFF3866 0.25 +0.4 63,671 - GFF3866 0.25 +1.2 63,671 - GFF3866 0.25 -0.1 63,671 - GFF3866 0.25 +0.5 63,671 - GFF3866 0.25 -0.6 63,671 - GFF3866 0.25 +0.4 63,671 - GFF3866 0.25 -0.1 63,671 - GFF3866 0.25 +1.0 63,671 - GFF3866 0.25 -0.2 63,671 - GFF3866 0.25 -0.5 63,671 - GFF3866 0.25 -0.1 63,671 - GFF3866 0.25 -1.2 63,671 - GFF3866 0.25 -0.3 63,671 - GFF3866 0.25 -1.1 63,788 + GFF3866 0.33 +0.0 63,789 - GFF3866 0.33 +2.3 63,789 - GFF3866 0.33 -1.2 63,789 - GFF3866 0.33 -0.9 63,789 - GFF3866 0.33 -0.5 63,789 - GFF3866 0.33 -0.9 63,789 - GFF3866 0.33 -0.6 63,789 - GFF3866 0.33 +0.6 63,789 - GFF3866 0.33 +0.9 63,789 - GFF3866 0.33 -0.1 63,789 - GFF3866 0.33 -1.0 63,789 - GFF3866 0.33 -1.2 63,834 + GFF3866 0.36 -0.0 63,834 + GFF3866 0.36 +0.1 63,835 - GFF3866 0.36 -0.3 63,835 - GFF3866 0.36 +1.4 63,835 - GFF3866 0.36 +0.6 63,835 - GFF3866 0.36 -0.3 63,835 - GFF3866 0.36 -0.3 63,835 - GFF3866 0.36 +0.0 63,835 - GFF3866 0.36 -0.2 63,835 - GFF3866 0.36 -0.4 63,946 + GFF3866 0.44 -1.0 63,946 + GFF3866 0.44 -1.4 63,946 + GFF3866 0.44 +0.7 63,946 + GFF3866 0.44 -1.6 63,946 + GFF3866 0.44 +0.0 63,946 + GFF3866 0.44 +0.3 63,946 + GFF3866 0.44 -0.2 63,947 - GFF3866 0.44 -0.7 63,947 - GFF3866 0.44 -0.6 63,947 - GFF3866 0.44 -0.7 63,947 - GFF3866 0.44 -1.0 63,947 - GFF3866 0.44 -1.1 63,947 - GFF3866 0.44 -0.7 63,947 - GFF3866 0.44 -0.4 64,048 + GFF3866 0.50 -0.6 64,048 + GFF3866 0.50 -0.5 64,048 + GFF3866 0.50 -0.4 64,048 + GFF3866 0.50 -0.2 64,048 + GFF3866 0.50 +0.5 64,048 + GFF3866 0.50 -1.2 64,049 - GFF3866 0.50 +1.3 64,049 - GFF3866 0.50 +0.4 64,049 - GFF3866 0.50 -0.6 64,049 - GFF3866 0.50 -0.2 64,049 - GFF3866 0.50 -1.1 64,128 + GFF3866 0.56 +0.2 64,128 + GFF3866 0.56 -0.4 64,128 + GFF3866 0.56 -0.4 64,128 + GFF3866 0.56 +3.6 64,128 + GFF3866 0.56 -0.4 64,128 + GFF3866 0.56 -1.7 64,129 - GFF3866 0.56 +0.2 64,129 - GFF3866 0.56 +0.7 64,129 - GFF3866 0.56 +0.0 64,129 - GFF3866 0.56 -0.3 64,129 - GFF3866 0.56 -1.8 64,129 - GFF3866 0.56 +1.3 64,129 - GFF3866 0.56 -0.2 64,129 - GFF3866 0.56 -0.3 64,178 + GFF3866 0.59 +0.0 64,179 - GFF3866 0.59 -0.5 64,179 - GFF3866 0.59 +0.4 64,179 - GFF3866 0.59 -0.8
Or see this region's nucleotide sequence