Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3794 and GFF3795 are separated by 90 nucleotides GFF3795 and GFF3796 are separated by 71 nucleotides GFF3796 and GFF3797 are separated by 24 nucleotides
GFF3794 - hypothetical protein, at 290,489 to 291,877
GFF3794
GFF3795 - Flagellar hook-length control protein FliK, at 291,968 to 296,440
GFF3795
GFF3796 - putative lipoprotein, at 296,512 to 297,387
GFF3796
GFF3797 - Ammonia monooxygenase, at 297,412 to 298,515
GFF3797
Position (kb) 291
292
293
294
295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.008 kb on + strand, within GFF3794 at 291.008 kb on + strand, within GFF3794 at 291.008 kb on + strand, within GFF3794 at 291.164 kb on + strand, within GFF3794 at 291.209 kb on + strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 291.210 kb on - strand, within GFF3794 at 292.230 kb on - strand at 292.230 kb on - strand at 292.400 kb on + strand at 292.400 kb on + strand at 292.400 kb on + strand at 292.400 kb on + strand at 292.401 kb on - strand at 292.401 kb on - strand at 292.401 kb on - strand at 292.401 kb on - strand at 292.959 kb on + strand, within GFF3795 at 292.959 kb on + strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 292.960 kb on - strand, within GFF3795 at 293.357 kb on + strand, within GFF3795 at 293.357 kb on + strand, within GFF3795 at 293.357 kb on + strand, within GFF3795 at 293.358 kb on - strand, within GFF3795 at 293.358 kb on - strand, within GFF3795 at 293.358 kb on - strand, within GFF3795 at 293.624 kb on + strand, within GFF3795 at 293.625 kb on - strand, within GFF3795 at 294.256 kb on + strand, within GFF3795 at 294.257 kb on - strand, within GFF3795 at 294.276 kb on - strand, within GFF3795 at 294.276 kb on - strand, within GFF3795 at 294.522 kb on - strand, within GFF3795 at 294.522 kb on - strand, within GFF3795 at 294.522 kb on - strand, within GFF3795 at 294.725 kb on + strand, within GFF3795 at 294.725 kb on + strand, within GFF3795 at 294.725 kb on + strand, within GFF3795 at 294.725 kb on + strand, within GFF3795 at 294.726 kb on - strand, within GFF3795 at 294.726 kb on - strand, within GFF3795 at 294.726 kb on - strand, within GFF3795 at 294.726 kb on - strand, within GFF3795 at 295.122 kb on - strand, within GFF3795 at 295.196 kb on + strand, within GFF3795 at 295.196 kb on + strand, within GFF3795 at 295.637 kb on + strand, within GFF3795 at 295.637 kb on + strand, within GFF3795 at 295.637 kb on + strand, within GFF3795 at 295.637 kb on + strand, within GFF3795 at 295.638 kb on - strand, within GFF3795 at 295.638 kb on - strand, within GFF3795 at 295.638 kb on - strand, within GFF3795 at 295.980 kb on - strand, within GFF3795 at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.114 kb on + strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.115 kb on - strand at 296.204 kb on + strand at 296.204 kb on + strand at 296.204 kb on + strand at 296.205 kb on - strand at 296.205 kb on - strand at 296.205 kb on - strand at 296.513 kb on + strand at 296.555 kb on + strand at 296.555 kb on + strand at 296.555 kb on + strand at 296.556 kb on - strand at 296.598 kb on - strand at 296.873 kb on + strand, within GFF3796 at 296.873 kb on + strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.874 kb on - strand, within GFF3796 at 296.999 kb on + strand, within GFF3796 at 296.999 kb on + strand, within GFF3796 at 296.999 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.000 kb on - strand, within GFF3796 at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.395 kb on + strand at 297.396 kb on - strand at 297.396 kb on - strand at 297.396 kb on - strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.398 kb on + strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand at 297.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 291,008 + GFF3794 0.37 -0.3 291,008 + GFF3794 0.37 -0.1 291,008 + GFF3794 0.37 -0.1 291,164 + GFF3794 0.49 -1.0 291,209 + GFF3794 0.52 -0.4 291,210 - GFF3794 0.52 -0.8 291,210 - GFF3794 0.52 -0.0 291,210 - GFF3794 0.52 -0.0 291,210 - GFF3794 0.52 +0.3 292,230 - -0.9 292,230 - +0.0 292,400 + -0.5 292,400 + +0.1 292,400 + -0.6 292,400 + -0.4 292,401 - -1.0 292,401 - -0.1 292,401 - -0.1 292,401 - -0.5 292,959 + GFF3795 0.22 +0.2 292,959 + GFF3795 0.22 -0.1 292,960 - GFF3795 0.22 +0.2 292,960 - GFF3795 0.22 +0.6 292,960 - GFF3795 0.22 +0.5 292,960 - GFF3795 0.22 -0.0 292,960 - GFF3795 0.22 +0.0 292,960 - GFF3795 0.22 -1.4 293,357 + GFF3795 0.31 +0.2 293,357 + GFF3795 0.31 -0.5 293,357 + GFF3795 0.31 -0.8 293,358 - GFF3795 0.31 -0.5 293,358 - GFF3795 0.31 -0.3 293,358 - GFF3795 0.31 +0.1 293,624 + GFF3795 0.37 +0.2 293,625 - GFF3795 0.37 +0.2 294,256 + GFF3795 0.51 +0.7 294,257 - GFF3795 0.51 +2.4 294,276 - GFF3795 0.52 -0.3 294,276 - GFF3795 0.52 -1.0 294,522 - GFF3795 0.57 +0.7 294,522 - GFF3795 0.57 +2.4 294,522 - GFF3795 0.57 +0.2 294,725 + GFF3795 0.62 +0.5 294,725 + GFF3795 0.62 +0.8 294,725 + GFF3795 0.62 +0.0 294,725 + GFF3795 0.62 -0.5 294,726 - GFF3795 0.62 -0.3 294,726 - GFF3795 0.62 +0.0 294,726 - GFF3795 0.62 +1.0 294,726 - GFF3795 0.62 -0.2 295,122 - GFF3795 0.71 -0.1 295,196 + GFF3795 0.72 -0.3 295,196 + GFF3795 0.72 -1.4 295,637 + GFF3795 0.82 -0.5 295,637 + GFF3795 0.82 -0.0 295,637 + GFF3795 0.82 -0.2 295,637 + GFF3795 0.82 +1.3 295,638 - GFF3795 0.82 -0.8 295,638 - GFF3795 0.82 +0.4 295,638 - GFF3795 0.82 -0.1 295,980 - GFF3795 0.90 -0.0 296,114 + -0.8 296,114 + -0.2 296,114 + +1.3 296,114 + -0.6 296,114 + +0.0 296,114 + -1.5 296,114 + +0.6 296,114 + -0.4 296,114 + -0.1 296,114 + -0.4 296,114 + -0.2 296,114 + +0.1 296,114 + +0.4 296,114 + +0.7 296,115 - -0.1 296,115 - -0.4 296,115 - -0.7 296,115 - +0.2 296,115 - -0.1 296,115 - -0.3 296,115 - -0.4 296,204 + -2.0 296,204 + -0.3 296,204 + -0.2 296,205 - -0.4 296,205 - -0.2 296,205 - +0.6 296,513 + +0.2 296,555 + -0.6 296,555 + +0.1 296,555 + -0.2 296,556 - -0.7 296,598 - -0.4 296,873 + GFF3796 0.41 -0.6 296,873 + GFF3796 0.41 +0.7 296,874 - GFF3796 0.41 +0.2 296,874 - GFF3796 0.41 -0.6 296,874 - GFF3796 0.41 -1.9 296,874 - GFF3796 0.41 +1.2 296,874 - GFF3796 0.41 -0.0 296,999 + GFF3796 0.56 +0.0 296,999 + GFF3796 0.56 +1.0 296,999 - GFF3796 0.56 -0.9 297,000 - GFF3796 0.56 -2.9 297,000 - GFF3796 0.56 +0.8 297,000 - GFF3796 0.56 -0.7 297,395 + -0.1 297,395 + -0.0 297,395 + -0.2 297,395 + -0.5 297,395 + +1.0 297,395 + -0.3 297,395 + -0.5 297,395 + -1.5 297,396 - -0.3 297,396 - +0.2 297,396 - +0.2 297,398 + -0.4 297,398 + -0.4 297,398 + +1.8 297,398 + +0.5 297,398 + -0.1 297,398 + -2.1 297,398 + -0.4 297,398 + -0.3 297,398 + -1.0 297,398 + -0.6 297,398 + -0.3 297,398 + +0.6 297,398 + +0.3 297,398 + +1.3 297,398 + -0.4 297,398 + -0.4 297,398 + -0.8 297,398 + +0.0 297,398 + +0.0 297,398 + +0.8 297,399 - +0.3 297,399 - -1.0 297,399 - +1.0 297,399 - -1.0 297,399 - +0.2 297,399 - -0.6 297,399 - -0.5 297,399 - +1.3 297,399 - -0.2 297,399 - -1.0 297,399 - -0.5 297,399 - -0.5 297,399 - -0.2 297,399 - -0.1 297,399 - +0.2 297,399 - +0.8 297,399 - -0.2
Or see this region's nucleotide sequence