Strain Fitness in Variovorax sp. SCN45 around GFF3789

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3788 and GFF3789 are separated by 121 nucleotidesGFF3789 and GFF3790 are separated by 1 nucleotidesGFF3790 and GFF3791 are separated by 69 nucleotides GFF3788 - putative secreted protein, at 285,196 to 286,521 GFF3788 GFF3789 - hypothetical protein, at 286,643 to 287,017 GFF3789 GFF3790 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 287,019 to 287,885 GFF3790 GFF3791 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 287,955 to 289,289 GFF3791 Position (kb) 286 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.712 kb on + strand, within GFF3788at 285.713 kb on - strand, within GFF3788at 285.713 kb on - strand, within GFF3788at 285.745 kb on + strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.746 kb on - strand, within GFF3788at 285.940 kb on + strand, within GFF3788at 286.435 kb on + strandat 286.436 kb on - strandat 286.436 kb on - strandat 286.436 kb on - strandat 286.556 kb on + strandat 286.556 kb on + strandat 286.556 kb on + strandat 286.556 kb on + strandat 286.556 kb on + strandat 286.556 kb on + strandat 286.557 kb on - strandat 286.557 kb on - strandat 286.557 kb on - strandat 286.557 kb on - strandat 286.560 kb on + strandat 286.560 kb on + strandat 286.560 kb on + strandat 286.561 kb on - strandat 286.561 kb on - strandat 286.561 kb on - strandat 286.561 kb on - strandat 286.823 kb on + strand, within GFF3789at 286.823 kb on + strand, within GFF3789at 286.823 kb on + strand, within GFF3789at 286.824 kb on - strand, within GFF3789at 286.824 kb on - strand, within GFF3789at 286.824 kb on - strand, within GFF3789at 286.862 kb on + strand, within GFF3789at 286.887 kb on - strand, within GFF3789at 286.887 kb on - strand, within GFF3789at 286.892 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.934 kb on + strand, within GFF3789at 286.935 kb on - strand, within GFF3789at 286.935 kb on - strand, within GFF3789at 286.935 kb on - strand, within GFF3789at 286.935 kb on - strand, within GFF3789at 286.982 kb on + strandat 286.983 kb on - strandat 287.006 kb on + strandat 287.020 kb on + strandat 287.021 kb on - strandat 287.021 kb on - strandat 287.021 kb on - strandat 287.142 kb on - strand, within GFF3790at 287.209 kb on + strand, within GFF3790at 287.209 kb on + strand, within GFF3790at 287.210 kb on - strand, within GFF3790at 287.257 kb on + strand, within GFF3790at 287.359 kb on + strand, within GFF3790at 287.360 kb on - strand, within GFF3790at 287.360 kb on - strand, within GFF3790at 287.474 kb on - strand, within GFF3790at 287.474 kb on - strand, within GFF3790at 287.492 kb on - strand, within GFF3790at 287.492 kb on - strand, within GFF3790at 287.492 kb on - strand, within GFF3790at 287.734 kb on - strand, within GFF3790at 287.756 kb on - strand, within GFF3790at 287.854 kb on + strandat 287.854 kb on + strandat 287.873 kb on + strandat 287.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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285,712 + GFF3788 0.39 -0.0
285,712 + GFF3788 0.39 -1.3
285,712 + GFF3788 0.39 -1.0
285,712 + GFF3788 0.39 -0.2
285,712 + GFF3788 0.39 -0.6
285,713 - GFF3788 0.39 -2.9
285,713 - GFF3788 0.39 -0.8
285,745 + GFF3788 0.41 -0.1
285,746 - GFF3788 0.41 -0.4
285,746 - GFF3788 0.41 -0.4
285,746 - GFF3788 0.41 -1.4
285,746 - GFF3788 0.41 +0.3
285,746 - GFF3788 0.41 +0.6
285,940 + GFF3788 0.56 -1.1
286,435 + -0.3
286,436 - -0.6
286,436 - -1.0
286,436 - -0.5
286,556 + -0.5
286,556 + -0.4
286,556 + -1.2
286,556 + -0.4
286,556 + -0.8
286,556 + +0.9
286,557 - +0.1
286,557 - +0.5
286,557 - -1.4
286,557 - -0.9
286,560 + +0.8
286,560 + +1.0
286,560 + -0.2
286,561 - -0.2
286,561 - +0.7
286,561 - +0.8
286,561 - -0.8
286,823 + GFF3789 0.48 -0.5
286,823 + GFF3789 0.48 +0.6
286,823 + GFF3789 0.48 +0.2
286,824 - GFF3789 0.48 -0.1
286,824 - GFF3789 0.48 -0.3
286,824 - GFF3789 0.48 +0.2
286,862 + GFF3789 0.58 +0.8
286,887 - GFF3789 0.65 -0.1
286,887 - GFF3789 0.65 +0.5
286,892 + GFF3789 0.66 +0.8
286,934 + GFF3789 0.78 -0.1
286,934 + GFF3789 0.78 -0.4
286,934 + GFF3789 0.78 +1.1
286,934 + GFF3789 0.78 -0.0
286,934 + GFF3789 0.78 -0.1
286,934 + GFF3789 0.78 -0.6
286,935 - GFF3789 0.78 -1.2
286,935 - GFF3789 0.78 +0.4
286,935 - GFF3789 0.78 +0.1
286,935 - GFF3789 0.78 +0.4
286,982 + -1.0
286,983 - +0.2
287,006 + +0.1
287,020 + -0.3
287,021 - -0.3
287,021 - -0.1
287,021 - -1.0
287,142 - GFF3790 0.14 +0.2
287,209 + GFF3790 0.22 -0.7
287,209 + GFF3790 0.22 +0.4
287,210 - GFF3790 0.22 -0.0
287,257 + GFF3790 0.27 -1.7
287,359 + GFF3790 0.39 -0.6
287,360 - GFF3790 0.39 -2.0
287,360 - GFF3790 0.39 +0.0
287,474 - GFF3790 0.52 -1.0
287,474 - GFF3790 0.52 -1.5
287,492 - GFF3790 0.55 +0.5
287,492 - GFF3790 0.55 -1.2
287,492 - GFF3790 0.55 -1.2
287,734 - GFF3790 0.82 -1.1
287,756 - GFF3790 0.85 +0.5
287,854 + +0.2
287,854 + -1.6
287,873 + -0.8
287,874 - -1.1

Or see this region's nucleotide sequence