Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3784 and GFF3785 are separated by 25 nucleotides GFF3785 and GFF3786 are separated by 85 nucleotides GFF3786 and GFF3787 are separated by 10 nucleotides
GFF3784 - ABC transporter, substrate-binding protein RSc1750, at 278,150 to 279,406
GFF3784
GFF3785 - Transcriptional regulator, AcrR family, at 279,432 to 280,127
GFF3785
GFF3786 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 280,213 to 281,826
GFF3786
GFF3787 - Biotin carboxylase (EC 6.3.4.14), at 281,837 to 285,130
GFF3787
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 279.243 kb on + strand, within GFF3784 at 279.243 kb on + strand, within GFF3784 at 279.318 kb on + strand at 279.318 kb on + strand at 279.318 kb on + strand at 279.319 kb on - strand at 279.319 kb on - strand at 279.523 kb on + strand, within GFF3785 at 279.524 kb on - strand, within GFF3785 at 279.640 kb on + strand, within GFF3785 at 279.640 kb on + strand, within GFF3785 at 279.640 kb on + strand, within GFF3785 at 279.641 kb on - strand, within GFF3785 at 279.641 kb on - strand, within GFF3785 at 279.677 kb on - strand, within GFF3785 at 279.883 kb on + strand, within GFF3785 at 279.883 kb on + strand, within GFF3785 at 279.884 kb on - strand, within GFF3785 at 279.886 kb on + strand, within GFF3785 at 279.886 kb on + strand, within GFF3785 at 279.886 kb on + strand, within GFF3785 at 279.886 kb on + strand, within GFF3785 at 279.887 kb on - strand, within GFF3785 at 279.887 kb on - strand, within GFF3785 at 279.889 kb on + strand, within GFF3785 at 279.890 kb on - strand, within GFF3785 at 280.119 kb on + strand at 280.119 kb on + strand at 280.132 kb on - strand at 280.430 kb on - strand, within GFF3786 at 280.625 kb on - strand, within GFF3786 at 280.798 kb on + strand, within GFF3786 at 280.798 kb on + strand, within GFF3786 at 280.798 kb on + strand, within GFF3786 at 280.798 kb on + strand, within GFF3786 at 280.798 kb on + strand, within GFF3786 at 280.799 kb on - strand, within GFF3786 at 280.799 kb on - strand, within GFF3786 at 280.843 kb on + strand, within GFF3786 at 280.844 kb on - strand, within GFF3786 at 280.988 kb on - strand, within GFF3786 at 281.060 kb on - strand, within GFF3786 at 281.250 kb on + strand, within GFF3786 at 281.263 kb on + strand, within GFF3786 at 281.264 kb on - strand, within GFF3786 at 281.264 kb on - strand, within GFF3786 at 281.264 kb on - strand, within GFF3786 at 281.414 kb on - strand, within GFF3786 at 281.414 kb on - strand, within GFF3786 at 281.500 kb on + strand, within GFF3786 at 281.500 kb on + strand, within GFF3786 at 281.549 kb on - strand, within GFF3786 at 281.549 kb on - strand, within GFF3786 at 281.734 kb on + strand at 281.734 kb on + strand at 281.734 kb on + strand at 281.734 kb on + strand at 281.734 kb on + strand at 281.735 kb on - strand at 281.735 kb on - strand at 281.735 kb on - strand at 281.735 kb on - strand at 281.735 kb on - strand at 281.735 kb on - strand at 282.012 kb on - strand at 282.431 kb on + strand, within GFF3787 at 282.431 kb on + strand, within GFF3787 at 282.431 kb on + strand, within GFF3787 at 282.431 kb on + strand, within GFF3787 at 282.431 kb on + strand, within GFF3787 at 282.432 kb on - strand, within GFF3787 at 282.432 kb on - strand, within GFF3787 at 282.432 kb on - strand, within GFF3787 at 282.432 kb on - strand, within GFF3787
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 279,243 + GFF3784 0.87 +0.2 279,243 + GFF3784 0.87 +0.3 279,318 + +0.2 279,318 + +0.2 279,318 + -1.7 279,319 - +0.6 279,319 - -0.5 279,523 + GFF3785 0.13 +0.1 279,524 - GFF3785 0.13 +0.3 279,640 + GFF3785 0.30 -0.2 279,640 + GFF3785 0.30 -0.7 279,640 + GFF3785 0.30 +0.1 279,641 - GFF3785 0.30 -1.9 279,641 - GFF3785 0.30 +0.2 279,677 - GFF3785 0.35 -0.6 279,883 + GFF3785 0.65 +0.3 279,883 + GFF3785 0.65 +1.2 279,884 - GFF3785 0.65 -1.2 279,886 + GFF3785 0.65 -0.7 279,886 + GFF3785 0.65 -0.8 279,886 + GFF3785 0.65 -1.3 279,886 + GFF3785 0.65 +0.9 279,887 - GFF3785 0.65 -0.3 279,887 - GFF3785 0.65 -0.5 279,889 + GFF3785 0.66 -0.2 279,890 - GFF3785 0.66 -0.4 280,119 + +0.2 280,119 + -0.0 280,132 - +0.2 280,430 - GFF3786 0.13 -0.1 280,625 - GFF3786 0.26 +0.4 280,798 + GFF3786 0.36 -2.7 280,798 + GFF3786 0.36 +0.0 280,798 + GFF3786 0.36 -0.6 280,798 + GFF3786 0.36 +1.6 280,798 + GFF3786 0.36 +1.4 280,799 - GFF3786 0.36 +0.4 280,799 - GFF3786 0.36 +0.4 280,843 + GFF3786 0.39 -0.8 280,844 - GFF3786 0.39 -0.2 280,988 - GFF3786 0.48 +1.0 281,060 - GFF3786 0.52 +0.2 281,250 + GFF3786 0.64 +0.2 281,263 + GFF3786 0.65 -0.3 281,264 - GFF3786 0.65 -0.1 281,264 - GFF3786 0.65 +0.0 281,264 - GFF3786 0.65 -0.6 281,414 - GFF3786 0.74 -1.4 281,414 - GFF3786 0.74 +0.5 281,500 + GFF3786 0.80 -0.7 281,500 + GFF3786 0.80 +0.4 281,549 - GFF3786 0.83 -0.1 281,549 - GFF3786 0.83 -0.1 281,734 + +0.5 281,734 + +1.8 281,734 + +0.2 281,734 + -0.6 281,734 + -0.6 281,735 - +0.2 281,735 - +0.5 281,735 - -1.3 281,735 - +0.0 281,735 - -0.7 281,735 - -0.2 282,012 - -0.0 282,431 + GFF3787 0.18 +0.2 282,431 + GFF3787 0.18 +0.1 282,431 + GFF3787 0.18 +0.9 282,431 + GFF3787 0.18 +2.8 282,431 + GFF3787 0.18 -1.1 282,432 - GFF3787 0.18 +0.6 282,432 - GFF3787 0.18 -0.7 282,432 - GFF3787 0.18 -0.4 282,432 - GFF3787 0.18 -0.3
Or see this region's nucleotide sequence