Strain Fitness in Variovorax sp. SCN45 around GFF3725

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3724 and GFF3725 overlap by 8 nucleotidesGFF3725 and GFF3726 are separated by 18 nucleotides GFF3724 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 220,445 to 221,872 GFF3724 GFF3725 - RND efflux system, inner membrane transporter, at 221,865 to 225,029 GFF3725 GFF3726 - RND efflux system, membrane fusion protein, at 225,048 to 226,313 GFF3726 Position (kb) 221 222 223 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 221.173 kb on - strand, within GFF3724at 221.214 kb on + strand, within GFF3724at 221.215 kb on - strand, within GFF3724at 221.403 kb on + strand, within GFF3724at 221.403 kb on + strand, within GFF3724at 221.404 kb on - strand, within GFF3724at 221.487 kb on + strand, within GFF3724at 221.487 kb on + strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.488 kb on - strand, within GFF3724at 221.623 kb on - strand, within GFF3724at 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.799 kb on + strandat 221.800 kb on - strandat 221.800 kb on - strandat 221.866 kb on + strandat 221.866 kb on + strandat 221.866 kb on + strandat 221.867 kb on - strandat 221.867 kb on - strandat 221.867 kb on - strandat 221.888 kb on + strandat 222.265 kb on + strand, within GFF3725at 222.265 kb on + strand, within GFF3725at 222.266 kb on - strand, within GFF3725at 222.281 kb on - strand, within GFF3725at 222.281 kb on - strand, within GFF3725at 222.368 kb on - strand, within GFF3725at 222.368 kb on - strand, within GFF3725at 222.412 kb on + strand, within GFF3725at 222.539 kb on - strand, within GFF3725at 222.577 kb on + strand, within GFF3725at 222.587 kb on - strand, within GFF3725at 222.587 kb on - strand, within GFF3725at 222.723 kb on + strand, within GFF3725at 222.723 kb on + strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.724 kb on - strand, within GFF3725at 222.769 kb on + strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 222.770 kb on - strand, within GFF3725at 223.048 kb on + strand, within GFF3725at 223.366 kb on + strand, within GFF3725at 223.366 kb on + strand, within GFF3725at 223.367 kb on - strand, within GFF3725at 223.399 kb on + strand, within GFF3725at 223.399 kb on + strand, within GFF3725at 223.399 kb on + strand, within GFF3725at 223.399 kb on + strand, within GFF3725at 223.400 kb on - strand, within GFF3725at 223.400 kb on - strand, within GFF3725at 223.400 kb on - strand, within GFF3725at 223.630 kb on + strand, within GFF3725at 223.630 kb on + strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.631 kb on - strand, within GFF3725at 223.939 kb on + strand, within GFF3725at 224.083 kb on + strand, within GFF3725at 224.083 kb on + strand, within GFF3725at 224.206 kb on + strand, within GFF3725at 224.206 kb on + strand, within GFF3725at 224.207 kb on - strand, within GFF3725at 224.207 kb on - strand, within GFF3725at 224.443 kb on + strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.444 kb on - strand, within GFF3725at 224.560 kb on + strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.561 kb on - strand, within GFF3725at 224.800 kb on + strandat 224.800 kb on + strandat 224.800 kb on + strandat 224.800 kb on + strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.801 kb on - strandat 224.926 kb on + strandat 224.927 kb on - strandat 225.049 kb on + strandat 225.049 kb on + strandat 225.049 kb on + strandat 225.050 kb on - strandat 225.050 kb on - strandat 225.050 kb on - strandat 225.400 kb on + strand, within GFF3726at 225.400 kb on + strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.401 kb on - strand, within GFF3726at 225.514 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.577 kb on + strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.578 kb on - strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.643 kb on + strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.644 kb on - strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.763 kb on + strand, within GFF3726at 225.853 kb on + strand, within GFF3726at 225.895 kb on + strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726at 225.896 kb on - strand, within GFF3726

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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221,173 - GFF3724 0.51 -0.3
221,214 + GFF3724 0.54 -0.3
221,215 - GFF3724 0.54 -0.3
221,403 + GFF3724 0.67 -0.4
221,403 + GFF3724 0.67 -0.1
221,404 - GFF3724 0.67 -0.5
221,487 + GFF3724 0.73 +0.1
221,487 + GFF3724 0.73 -0.2
221,488 - GFF3724 0.73 +0.4
221,488 - GFF3724 0.73 +0.6
221,488 - GFF3724 0.73 -0.0
221,623 - GFF3724 0.82 -0.1
221,799 + +0.4
221,799 + -0.5
221,799 + +0.2
221,799 + +0.5
221,799 + +0.5
221,799 + -0.3
221,799 + -0.4
221,800 - -0.5
221,800 - -0.8
221,866 + -0.1
221,866 + +0.2
221,866 + +0.8
221,867 - -0.2
221,867 - -1.4
221,867 - +1.0
221,888 + +0.5
222,265 + GFF3725 0.13 -0.8
222,265 + GFF3725 0.13 -0.3
222,266 - GFF3725 0.13 +0.7
222,281 - GFF3725 0.13 +0.3
222,281 - GFF3725 0.13 -0.3
222,368 - GFF3725 0.16 +0.0
222,368 - GFF3725 0.16 +0.4
222,412 + GFF3725 0.17 -0.1
222,539 - GFF3725 0.21 -0.1
222,577 + GFF3725 0.22 -1.5
222,587 - GFF3725 0.23 +1.6
222,587 - GFF3725 0.23 -0.0
222,723 + GFF3725 0.27 -0.4
222,723 + GFF3725 0.27 -0.5
222,724 - GFF3725 0.27 -0.3
222,724 - GFF3725 0.27 -0.3
222,724 - GFF3725 0.27 -1.5
222,769 + GFF3725 0.29 +0.2
222,770 - GFF3725 0.29 -0.7
222,770 - GFF3725 0.29 -0.2
222,770 - GFF3725 0.29 -0.4
222,770 - GFF3725 0.29 -0.3
223,048 + GFF3725 0.37 -0.7
223,366 + GFF3725 0.47 +0.9
223,366 + GFF3725 0.47 -0.3
223,367 - GFF3725 0.47 -0.5
223,399 + GFF3725 0.48 -0.0
223,399 + GFF3725 0.48 -0.7
223,399 + GFF3725 0.48 -0.6
223,399 + GFF3725 0.48 -1.1
223,400 - GFF3725 0.48 +0.8
223,400 - GFF3725 0.48 +0.8
223,400 - GFF3725 0.48 +0.3
223,630 + GFF3725 0.56 -0.3
223,630 + GFF3725 0.56 -1.3
223,631 - GFF3725 0.56 -0.8
223,631 - GFF3725 0.56 -0.5
223,631 - GFF3725 0.56 +1.8
223,631 - GFF3725 0.56 -0.3
223,631 - GFF3725 0.56 -1.6
223,631 - GFF3725 0.56 -1.1
223,631 - GFF3725 0.56 +0.0
223,631 - GFF3725 0.56 -0.8
223,939 + GFF3725 0.66 +0.5
224,083 + GFF3725 0.70 -1.3
224,083 + GFF3725 0.70 +0.3
224,206 + GFF3725 0.74 -0.2
224,206 + GFF3725 0.74 -0.6
224,207 - GFF3725 0.74 -0.2
224,207 - GFF3725 0.74 +0.4
224,443 + GFF3725 0.81 -0.3
224,444 - GFF3725 0.81 +0.0
224,444 - GFF3725 0.81 +0.9
224,444 - GFF3725 0.81 +1.2
224,444 - GFF3725 0.81 -0.6
224,444 - GFF3725 0.81 +0.4
224,560 + GFF3725 0.85 -0.4
224,561 - GFF3725 0.85 -0.2
224,561 - GFF3725 0.85 -0.4
224,561 - GFF3725 0.85 -1.0
224,561 - GFF3725 0.85 -0.8
224,800 + -0.3
224,800 + +0.8
224,800 + -1.8
224,800 + -0.3
224,801 - +1.6
224,801 - -0.7
224,801 - -0.1
224,801 - -0.9
224,801 - +1.2
224,926 + +0.5
224,927 - +0.8
225,049 + +0.3
225,049 + -0.2
225,049 + -1.5
225,050 - -0.2
225,050 - -0.4
225,050 - -0.3
225,400 + GFF3726 0.28 +1.3
225,400 + GFF3726 0.28 +0.3
225,401 - GFF3726 0.28 -0.8
225,401 - GFF3726 0.28 +0.2
225,401 - GFF3726 0.28 -0.6
225,401 - GFF3726 0.28 +1.0
225,401 - GFF3726 0.28 -0.7
225,401 - GFF3726 0.28 -0.5
225,401 - GFF3726 0.28 +0.1
225,514 + GFF3726 0.37 +0.3
225,577 + GFF3726 0.42 -0.8
225,577 + GFF3726 0.42 -0.9
225,577 + GFF3726 0.42 +0.0
225,578 - GFF3726 0.42 +0.1
225,578 - GFF3726 0.42 -0.6
225,643 + GFF3726 0.47 +0.8
225,643 + GFF3726 0.47 -0.6
225,643 + GFF3726 0.47 +0.6
225,643 + GFF3726 0.47 -0.6
225,644 - GFF3726 0.47 -0.0
225,644 - GFF3726 0.47 -0.9
225,644 - GFF3726 0.47 -1.7
225,644 - GFF3726 0.47 -0.6
225,644 - GFF3726 0.47 -0.7
225,644 - GFF3726 0.47 +0.6
225,644 - GFF3726 0.47 +0.0
225,644 - GFF3726 0.47 -0.5
225,763 + GFF3726 0.56 +0.2
225,763 + GFF3726 0.56 -0.6
225,853 + GFF3726 0.64 -0.1
225,895 + GFF3726 0.67 -0.7
225,896 - GFF3726 0.67 -0.3
225,896 - GFF3726 0.67 -0.5
225,896 - GFF3726 0.67 -0.1
225,896 - GFF3726 0.67 -0.0

Or see this region's nucleotide sequence