Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3715 and GFF3716 overlap by 4 nucleotides GFF3716 and GFF3717 are separated by 8 nucleotides GFF3717 and GFF3718 are separated by 20 nucleotides GFF3718 and GFF3719 are separated by 14 nucleotides
GFF3715 - Probable malonic semialdehyde reductase RutE (EC 1.1.1.298), at 213,546 to 214,145
GFF3715
GFF3716 - Possible hydrolase or acyltransferase RutD in novel pyrimidine catabolism pathway, at 214,142 to 214,948
GFF3716
GFF3717 - Putative aminoacrylate peracid reductase RutC @ RidA/YER057c/UK114 superfamily protein, at 214,957 to 215,349
GFF3717
GFF3718 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB (EC 3.5.1.110), at 215,370 to 216,161
GFF3718
GFF3719 - Pyrimidine monooxygenase RutA (EC 1.14.99.46), at 216,176 to 217,288
GFF3719
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 214.027 kb on + strand, within GFF3715 at 214.027 kb on + strand, within GFF3715 at 214.028 kb on - strand, within GFF3715 at 214.150 kb on + strand at 214.522 kb on - strand, within GFF3716 at 214.758 kb on + strand, within GFF3716 at 214.759 kb on - strand, within GFF3716 at 214.759 kb on - strand, within GFF3716 at 214.759 kb on - strand, within GFF3716 at 215.037 kb on - strand, within GFF3717 at 215.264 kb on + strand, within GFF3717 at 215.264 kb on + strand, within GFF3717 at 215.264 kb on + strand, within GFF3717 at 215.264 kb on + strand, within GFF3717 at 215.265 kb on - strand, within GFF3717 at 215.265 kb on - strand, within GFF3717 at 215.265 kb on - strand, within GFF3717 at 215.297 kb on + strand, within GFF3717 at 215.297 kb on + strand, within GFF3717 at 215.298 kb on - strand, within GFF3717 at 215.479 kb on + strand, within GFF3718 at 215.480 kb on - strand, within GFF3718 at 215.480 kb on - strand, within GFF3718 at 215.549 kb on - strand, within GFF3718 at 215.625 kb on + strand, within GFF3718 at 215.677 kb on + strand, within GFF3718 at 215.678 kb on - strand, within GFF3718 at 215.851 kb on + strand, within GFF3718 at 215.852 kb on - strand, within GFF3718 at 215.852 kb on - strand, within GFF3718 at 215.980 kb on + strand, within GFF3718 at 215.980 kb on + strand, within GFF3718 at 215.981 kb on - strand, within GFF3718 at 215.981 kb on - strand, within GFF3718 at 215.998 kb on + strand, within GFF3718
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 214,027 + GFF3715 0.80 +0.8 214,027 + GFF3715 0.80 -0.2 214,028 - GFF3715 0.80 +1.6 214,150 + -0.0 214,522 - GFF3716 0.47 -0.6 214,758 + GFF3716 0.76 -0.5 214,759 - GFF3716 0.76 +1.0 214,759 - GFF3716 0.76 -1.1 214,759 - GFF3716 0.76 -1.3 215,037 - GFF3717 0.20 -0.1 215,264 + GFF3717 0.78 -0.6 215,264 + GFF3717 0.78 +0.3 215,264 + GFF3717 0.78 -0.3 215,264 + GFF3717 0.78 +0.2 215,265 - GFF3717 0.78 -0.4 215,265 - GFF3717 0.78 +0.7 215,265 - GFF3717 0.78 +1.4 215,297 + GFF3717 0.87 +0.5 215,297 + GFF3717 0.87 +0.0 215,298 - GFF3717 0.87 -0.4 215,479 + GFF3718 0.14 +0.3 215,480 - GFF3718 0.14 -0.9 215,480 - GFF3718 0.14 -0.1 215,549 - GFF3718 0.23 -0.8 215,625 + GFF3718 0.32 -0.6 215,677 + GFF3718 0.39 +0.0 215,678 - GFF3718 0.39 -0.1 215,851 + GFF3718 0.61 -0.3 215,852 - GFF3718 0.61 +1.2 215,852 - GFF3718 0.61 -2.4 215,980 + GFF3718 0.77 -0.2 215,980 + GFF3718 0.77 +0.8 215,981 - GFF3718 0.77 -0.4 215,981 - GFF3718 0.77 -0.7 215,998 + GFF3718 0.79 +0.0
Or see this region's nucleotide sequence