Strain Fitness in Variovorax sp. SCN45 around GFF3557

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3556 and GFF3557 are separated by 143 nucleotidesGFF3557 and GFF3558 overlap by 11 nucleotides GFF3556 - BUG/TctC family periplasmic protein, at 66,322 to 67,314 GFF3556 GFF3557 - hypothetical protein, at 67,458 to 69,131 GFF3557 GFF3558 - hypothetical protein, at 69,121 to 70,251 GFF3558 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 66.652 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.667 kb on + strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 66.668 kb on - strand, within GFF3556at 67.329 kb on + strandat 67.329 kb on + strandat 67.372 kb on + strandat 67.372 kb on + strandat 67.373 kb on - strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.386 kb on + strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.387 kb on - strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.827 kb on + strand, within GFF3557at 67.827 kb on + strand, within GFF3557at 67.827 kb on + strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.828 kb on - strand, within GFF3557at 67.974 kb on + strand, within GFF3557at 67.974 kb on + strand, within GFF3557at 67.975 kb on - strand, within GFF3557at 67.975 kb on - strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.160 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.235 kb on + strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.236 kb on - strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.589 kb on + strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.590 kb on - strand, within GFF3557at 68.696 kb on - strand, within GFF3557at 68.770 kb on - strand, within GFF3557at 69.398 kb on + strand, within GFF3558at 69.513 kb on - strand, within GFF3558at 69.513 kb on - strand, within GFF3558at 69.609 kb on - strand, within GFF3558at 69.855 kb on - strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.004 kb on + strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.005 kb on - strand, within GFF3558at 70.070 kb on + strand, within GFF3558at 70.071 kb on - strand, within GFF3558

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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66,652 + GFF3556 0.33 +0.1
66,667 + GFF3556 0.35 -0.2
66,667 + GFF3556 0.35 -0.9
66,667 + GFF3556 0.35 -1.2
66,667 + GFF3556 0.35 -0.7
66,667 + GFF3556 0.35 -0.2
66,667 + GFF3556 0.35 +0.2
66,667 + GFF3556 0.35 +1.5
66,667 + GFF3556 0.35 -0.7
66,668 - GFF3556 0.35 +0.2
66,668 - GFF3556 0.35 -0.4
66,668 - GFF3556 0.35 -0.1
66,668 - GFF3556 0.35 +0.2
66,668 - GFF3556 0.35 +2.8
66,668 - GFF3556 0.35 -0.5
66,668 - GFF3556 0.35 +0.7
66,668 - GFF3556 0.35 +0.0
66,668 - GFF3556 0.35 +0.2
66,668 - GFF3556 0.35 +0.2
67,329 + -0.2
67,329 + +0.3
67,372 + +0.4
67,372 + +0.0
67,373 - +0.5
67,386 + -0.0
67,386 + -0.0
67,386 + -0.5
67,386 + -0.1
67,386 + -0.4
67,386 + +0.8
67,387 - -0.5
67,387 - -1.2
67,387 - -0.3
67,387 - +0.6
67,387 - -0.5
67,387 - -0.3
67,530 + +0.8
67,530 + -0.1
67,530 + +0.8
67,530 + -0.1
67,530 + +0.1
67,530 + +0.5
67,530 + -0.3
67,530 + -0.1
67,530 + -0.3
67,530 + -1.2
67,531 - +1.2
67,531 - +0.6
67,531 - +0.2
67,531 - -0.6
67,531 - +0.1
67,531 - +0.4
67,531 - -1.0
67,531 - -0.2
67,827 + GFF3557 0.22 +0.4
67,827 + GFF3557 0.22 -0.7
67,827 + GFF3557 0.22 +0.6
67,828 - GFF3557 0.22 +2.0
67,828 - GFF3557 0.22 -0.3
67,828 - GFF3557 0.22 +0.8
67,974 + GFF3557 0.31 -0.2
67,974 + GFF3557 0.31 -2.7
67,975 - GFF3557 0.31 -0.9
67,975 - GFF3557 0.31 +0.2
68,160 + GFF3557 0.42 -0.5
68,160 + GFF3557 0.42 -0.6
68,160 + GFF3557 0.42 +0.3
68,160 + GFF3557 0.42 -0.7
68,235 + GFF3557 0.46 -0.6
68,235 + GFF3557 0.46 -2.9
68,235 + GFF3557 0.46 -1.2
68,235 + GFF3557 0.46 -0.8
68,235 + GFF3557 0.46 -1.7
68,235 + GFF3557 0.46 +1.8
68,235 + GFF3557 0.46 -0.3
68,235 + GFF3557 0.46 +0.2
68,235 + GFF3557 0.46 -0.2
68,235 + GFF3557 0.46 +1.0
68,235 + GFF3557 0.46 +0.1
68,236 - GFF3557 0.46 +0.3
68,236 - GFF3557 0.46 -0.0
68,236 - GFF3557 0.46 +0.9
68,236 - GFF3557 0.46 -1.2
68,236 - GFF3557 0.46 -0.1
68,236 - GFF3557 0.46 +0.6
68,236 - GFF3557 0.46 -0.6
68,236 - GFF3557 0.46 -1.4
68,236 - GFF3557 0.46 -0.4
68,236 - GFF3557 0.46 +1.2
68,236 - GFF3557 0.46 +0.4
68,236 - GFF3557 0.46 +0.1
68,236 - GFF3557 0.46 +1.8
68,236 - GFF3557 0.46 -1.1
68,236 - GFF3557 0.46 -0.4
68,236 - GFF3557 0.46 -0.8
68,236 - GFF3557 0.46 +1.0
68,236 - GFF3557 0.46 -1.2
68,236 - GFF3557 0.46 -0.7
68,236 - GFF3557 0.46 -1.2
68,236 - GFF3557 0.46 -0.5
68,589 + GFF3557 0.68 -0.0
68,589 + GFF3557 0.68 -0.2
68,589 + GFF3557 0.68 -0.4
68,589 + GFF3557 0.68 -2.1
68,589 + GFF3557 0.68 -0.2
68,589 + GFF3557 0.68 +0.8
68,589 + GFF3557 0.68 -1.3
68,589 + GFF3557 0.68 -0.4
68,589 + GFF3557 0.68 +0.2
68,589 + GFF3557 0.68 -0.7
68,589 + GFF3557 0.68 -0.5
68,589 + GFF3557 0.68 -0.2
68,590 - GFF3557 0.68 -1.4
68,590 - GFF3557 0.68 -0.7
68,590 - GFF3557 0.68 +0.4
68,590 - GFF3557 0.68 -0.4
68,590 - GFF3557 0.68 -0.2
68,590 - GFF3557 0.68 -0.0
68,696 - GFF3557 0.74 +1.2
68,770 - GFF3557 0.78 -0.3
69,398 + GFF3558 0.24 -0.7
69,513 - GFF3558 0.35 -0.6
69,513 - GFF3558 0.35 -0.1
69,609 - GFF3558 0.43 +0.5
69,855 - GFF3558 0.65 -1.1
70,004 + GFF3558 0.78 -1.4
70,004 + GFF3558 0.78 +0.0
70,004 + GFF3558 0.78 -0.6
70,004 + GFF3558 0.78 -1.4
70,004 + GFF3558 0.78 -0.2
70,004 + GFF3558 0.78 -0.5
70,004 + GFF3558 0.78 -0.3
70,004 + GFF3558 0.78 -0.7
70,004 + GFF3558 0.78 -0.0
70,004 + GFF3558 0.78 -1.4
70,004 + GFF3558 0.78 -1.2
70,004 + GFF3558 0.78 +0.4
70,004 + GFF3558 0.78 -0.7
70,004 + GFF3558 0.78 -0.0
70,004 + GFF3558 0.78 +0.5
70,005 - GFF3558 0.78 +0.3
70,005 - GFF3558 0.78 -2.1
70,005 - GFF3558 0.78 +0.6
70,005 - GFF3558 0.78 -0.7
70,005 - GFF3558 0.78 -0.6
70,005 - GFF3558 0.78 -0.2
70,005 - GFF3558 0.78 -0.3
70,005 - GFF3558 0.78 +0.3
70,070 + GFF3558 0.84 -0.4
70,071 - GFF3558 0.84 -1.2

Or see this region's nucleotide sequence