Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3391 and GFF3392 are separated by 106 nucleotides GFF3392 and GFF3393 are separated by 31 nucleotides GFF3393 and GFF3394 overlap by 1 nucleotides
GFF3391 - Chlorogenate esterase, at 213,203 to 215,116
GFF3391
GFF3392 - Transcriptional regulator, AraC family, at 215,223 to 216,101
GFF3392
GFF3393 - Benzoate ABC transporter, ATP-binding protein 2, at 216,133 to 216,834
GFF3393
GFF3394 - Benzoate ABC transporter, ATP-binding protein 1, at 216,834 to 217,583
GFF3394
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.239 kb on + strand, within GFF3391 at 214.240 kb on - strand, within GFF3391 at 214.369 kb on - strand, within GFF3391 at 214.374 kb on + strand, within GFF3391 at 214.374 kb on + strand, within GFF3391 at 214.375 kb on - strand, within GFF3391 at 214.375 kb on - strand, within GFF3391 at 214.375 kb on - strand, within GFF3391 at 214.392 kb on + strand, within GFF3391 at 214.392 kb on + strand, within GFF3391 at 214.392 kb on + strand, within GFF3391 at 215.137 kb on - strand at 215.137 kb on - strand at 215.137 kb on - strand at 215.137 kb on - strand at 215.171 kb on + strand at 215.383 kb on + strand, within GFF3392 at 215.383 kb on + strand, within GFF3392 at 215.384 kb on - strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.509 kb on + strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.510 kb on - strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.590 kb on + strand, within GFF3392 at 215.591 kb on - strand, within GFF3392 at 215.823 kb on + strand, within GFF3392 at 215.824 kb on - strand, within GFF3392 at 215.830 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.953 kb on + strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 215.954 kb on - strand, within GFF3392 at 216.134 kb on + strand at 216.134 kb on + strand at 216.596 kb on + strand, within GFF3393 at 216.596 kb on + strand, within GFF3393 at 216.597 kb on - strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.686 kb on + strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.687 kb on - strand, within GFF3393 at 216.803 kb on + strand at 216.804 kb on - strand at 216.804 kb on - strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.806 kb on + strand at 216.807 kb on - strand at 216.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 214,239 + GFF3391 0.54 +0.1 214,240 - GFF3391 0.54 -0.9 214,369 - GFF3391 0.61 -0.4 214,374 + GFF3391 0.61 -0.4 214,374 + GFF3391 0.61 -0.7 214,375 - GFF3391 0.61 -0.6 214,375 - GFF3391 0.61 -0.8 214,375 - GFF3391 0.61 -1.4 214,392 + GFF3391 0.62 +0.9 214,392 + GFF3391 0.62 +1.0 214,392 + GFF3391 0.62 -1.4 215,137 - -0.2 215,137 - -0.9 215,137 - -0.2 215,137 - -0.7 215,171 + +0.1 215,383 + GFF3392 0.18 -0.1 215,383 + GFF3392 0.18 -0.4 215,384 - GFF3392 0.18 +0.0 215,509 + GFF3392 0.33 -0.1 215,509 + GFF3392 0.33 +0.3 215,509 + GFF3392 0.33 +0.4 215,509 + GFF3392 0.33 -0.4 215,510 - GFF3392 0.33 -0.9 215,510 - GFF3392 0.33 -0.3 215,510 - GFF3392 0.33 +0.3 215,510 - GFF3392 0.33 +0.1 215,510 - GFF3392 0.33 -1.5 215,590 + GFF3392 0.42 -0.7 215,590 + GFF3392 0.42 -0.4 215,590 + GFF3392 0.42 -0.1 215,591 - GFF3392 0.42 -0.1 215,823 + GFF3392 0.68 -0.6 215,824 - GFF3392 0.68 -1.6 215,830 + GFF3392 0.69 +2.2 215,953 + GFF3392 0.83 +0.9 215,953 + GFF3392 0.83 -0.6 215,953 + GFF3392 0.83 +0.2 215,954 - GFF3392 0.83 +0.9 215,954 - GFF3392 0.83 -0.5 215,954 - GFF3392 0.83 -0.3 215,954 - GFF3392 0.83 -0.1 216,134 + -2.0 216,134 + -1.3 216,596 + GFF3393 0.66 +1.9 216,596 + GFF3393 0.66 -0.4 216,597 - GFF3393 0.66 +0.5 216,686 + GFF3393 0.79 +0.6 216,686 + GFF3393 0.79 -0.4 216,687 - GFF3393 0.79 +0.1 216,687 - GFF3393 0.79 +0.2 216,803 + +0.3 216,804 - +0.1 216,804 - -0.7 216,806 + +1.0 216,806 + -0.0 216,806 + +0.3 216,806 + -0.8 216,807 - -0.5 216,807 - +0.7
Or see this region's nucleotide sequence