Strain Fitness in Variovorax sp. SCN45 around GFF3386

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3385 and GFF3386 are separated by 371 nucleotidesGFF3386 and GFF3387 are separated by 45 nucleotidesGFF3387 and GFF3388 are separated by 64 nucleotidesGFF3388 and GFF3389 overlap by 4 nucleotides GFF3385 - Flavin-containing monooxygenase, at 205,437 to 207,248 GFF3385 GFF3386 - hypothetical protein, at 207,620 to 209,011 GFF3386 GFF3387 - no description, at 209,057 to 209,179 GFF3387 GFF3388 - Transcriptional regulator, AcrR family, at 209,244 to 209,909 GFF3388 GFF3389 - Glycosyl transferases, related to UDP-glucuronosyltransferase, at 209,906 to 211,126 GFF3389 Position (kb) 207 208 209 210Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.755 kb on + strand, within GFF3385at 206.960 kb on + strand, within GFF3385at 207.446 kb on + strandat 207.447 kb on - strandat 207.460 kb on + strandat 207.460 kb on + strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.461 kb on - strandat 207.530 kb on - strandat 207.538 kb on - strandat 207.554 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.595 kb on + strandat 207.596 kb on - strandat 207.833 kb on + strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.834 kb on - strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.964 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.995 kb on + strand, within GFF3386at 207.996 kb on - strand, within GFF3386at 208.080 kb on - strand, within GFF3386at 208.142 kb on + strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.143 kb on - strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.208 kb on + strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.209 kb on - strand, within GFF3386at 208.334 kb on + strand, within GFF3386at 208.335 kb on - strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.400 kb on + strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.401 kb on - strand, within GFF3386at 208.511 kb on + strand, within GFF3386at 208.512 kb on - strand, within GFF3386at 208.512 kb on - strand, within GFF3386at 208.512 kb on - strand, within GFF3386at 208.610 kb on - strand, within GFF3386at 208.610 kb on - strand, within GFF3386at 208.658 kb on + strand, within GFF3386at 208.659 kb on - strand, within GFF3386at 208.659 kb on - strand, within GFF3386at 208.659 kb on - strand, within GFF3386at 208.730 kb on + strand, within GFF3386at 208.730 kb on + strand, within GFF3386at 209.009 kb on + strandat 209.009 kb on + strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.010 kb on - strandat 209.016 kb on + strandat 209.016 kb on + strandat 209.017 kb on - strandat 209.017 kb on - strandat 209.344 kb on - strand, within GFF3388at 209.390 kb on + strand, within GFF3388at 209.391 kb on - strand, within GFF3388at 209.403 kb on + strand, within GFF3388at 209.403 kb on + strand, within GFF3388at 209.404 kb on - strand, within GFF3388at 209.404 kb on - strand, within GFF3388at 209.404 kb on - strand, within GFF3388at 209.583 kb on + strand, within GFF3388at 209.583 kb on + strand, within GFF3388at 209.584 kb on - strand, within GFF3388at 209.584 kb on - strand, within GFF3388at 209.769 kb on + strand, within GFF3388at 209.769 kb on + strand, within GFF3388at 209.770 kb on - strand, within GFF3388at 209.770 kb on - strand, within GFF3388at 209.770 kb on - strand, within GFF3388at 209.927 kb on + strandat 209.927 kb on + strandat 209.928 kb on - strandat 209.928 kb on - strandat 209.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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206,755 + GFF3385 0.73 -0.4
206,755 + GFF3385 0.73 +0.2
206,755 + GFF3385 0.73 +0.3
206,960 + GFF3385 0.84 +0.0
207,446 + -0.1
207,447 - +0.5
207,460 + -2.1
207,460 + -0.7
207,461 - -0.8
207,461 - +0.7
207,461 - +0.5
207,530 - +0.1
207,538 - -0.1
207,554 + +0.9
207,595 + +0.6
207,595 + -0.5
207,595 + -0.3
207,595 + -1.6
207,596 - -0.0
207,833 + GFF3386 0.15 +0.2
207,834 - GFF3386 0.15 -1.2
207,834 - GFF3386 0.15 +0.1
207,834 - GFF3386 0.15 -0.4
207,834 - GFF3386 0.15 +0.9
207,964 + GFF3386 0.25 +0.7
207,964 + GFF3386 0.25 -0.3
207,995 + GFF3386 0.27 -0.3
207,995 + GFF3386 0.27 +0.3
207,995 + GFF3386 0.27 -0.5
207,995 + GFF3386 0.27 -0.5
207,995 + GFF3386 0.27 -0.4
207,995 + GFF3386 0.27 -0.1
207,995 + GFF3386 0.27 -2.6
207,996 - GFF3386 0.27 +0.6
208,080 - GFF3386 0.33 -0.0
208,142 + GFF3386 0.38 -0.3
208,143 - GFF3386 0.38 -0.3
208,143 - GFF3386 0.38 -0.5
208,143 - GFF3386 0.38 -0.6
208,143 - GFF3386 0.38 -0.6
208,143 - GFF3386 0.38 -0.5
208,208 + GFF3386 0.42 -1.6
208,208 + GFF3386 0.42 +0.1
208,208 + GFF3386 0.42 -2.0
208,208 + GFF3386 0.42 -0.3
208,208 + GFF3386 0.42 +0.9
208,208 + GFF3386 0.42 -1.5
208,208 + GFF3386 0.42 -0.1
208,209 - GFF3386 0.42 -0.6
208,209 - GFF3386 0.42 -0.8
208,209 - GFF3386 0.42 +0.1
208,334 + GFF3386 0.51 -0.1
208,335 - GFF3386 0.51 +0.2
208,400 + GFF3386 0.56 -0.7
208,400 + GFF3386 0.56 +0.1
208,400 + GFF3386 0.56 -0.5
208,400 + GFF3386 0.56 +0.3
208,400 + GFF3386 0.56 -0.8
208,400 + GFF3386 0.56 +1.9
208,400 + GFF3386 0.56 -0.4
208,401 - GFF3386 0.56 -0.3
208,401 - GFF3386 0.56 +0.2
208,401 - GFF3386 0.56 +0.3
208,401 - GFF3386 0.56 -0.6
208,401 - GFF3386 0.56 -1.7
208,401 - GFF3386 0.56 -0.3
208,401 - GFF3386 0.56 -0.1
208,401 - GFF3386 0.56 -0.7
208,511 + GFF3386 0.64 -0.8
208,512 - GFF3386 0.64 -0.2
208,512 - GFF3386 0.64 -0.9
208,512 - GFF3386 0.64 -0.3
208,610 - GFF3386 0.71 +0.1
208,610 - GFF3386 0.71 -0.2
208,658 + GFF3386 0.75 -0.4
208,659 - GFF3386 0.75 -0.0
208,659 - GFF3386 0.75 +0.1
208,659 - GFF3386 0.75 +0.5
208,730 + GFF3386 0.80 -0.0
208,730 + GFF3386 0.80 -0.1
209,009 + -0.4
209,009 + -0.7
209,010 - +0.3
209,010 - -1.1
209,010 - -0.5
209,016 + -0.8
209,016 + -0.2
209,017 - -1.5
209,017 - -0.1
209,344 - GFF3388 0.15 +0.1
209,390 + GFF3388 0.22 -0.6
209,391 - GFF3388 0.22 -0.1
209,403 + GFF3388 0.24 -2.1
209,403 + GFF3388 0.24 -0.3
209,404 - GFF3388 0.24 -0.6
209,404 - GFF3388 0.24 +0.1
209,404 - GFF3388 0.24 -0.9
209,583 + GFF3388 0.51 +0.1
209,583 + GFF3388 0.51 +0.0
209,584 - GFF3388 0.51 -0.8
209,584 - GFF3388 0.51 +0.3
209,769 + GFF3388 0.79 -0.5
209,769 + GFF3388 0.79 -0.6
209,770 - GFF3388 0.79 -0.1
209,770 - GFF3388 0.79 +3.4
209,770 - GFF3388 0.79 -0.4
209,927 + -0.7
209,927 + -1.9
209,928 - -0.3
209,928 - -0.5
209,928 - +0.5

Or see this region's nucleotide sequence