Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3373 and GFF3374 are separated by 21 nucleotides GFF3374 and GFF3375 overlap by 4 nucleotides GFF3375 and GFF3376 are separated by 30 nucleotides
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
GFF3374 - no description, at 194,252 to 194,371
GFF3374
GFF3375 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 194,368 to 195,756
GFF3375
GFF3376 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 195,787 to 197,343
GFF3376
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1
2 at 193.476 kb on + strand, within GFF3373 at 193.476 kb on + strand, within GFF3373 at 193.477 kb on - strand, within GFF3373 at 193.858 kb on - strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.007 kb on + strand, within GFF3373 at 194.008 kb on - strand, within GFF3373 at 194.274 kb on + strand, within GFF3374 at 194.274 kb on + strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.275 kb on - strand, within GFF3374 at 194.483 kb on - strand at 194.740 kb on + strand, within GFF3375 at 194.740 kb on + strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 194.741 kb on - strand, within GFF3375 at 195.175 kb on + strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.176 kb on - strand, within GFF3375 at 195.271 kb on + strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.272 kb on - strand, within GFF3375 at 195.394 kb on + strand, within GFF3375 at 195.394 kb on + strand, within GFF3375 at 195.395 kb on - strand, within GFF3375 at 195.436 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.550 kb on + strand, within GFF3375 at 195.551 kb on - strand, within GFF3375 at 195.884 kb on + strand at 195.884 kb on + strand at 195.885 kb on - strand at 196.061 kb on + strand, within GFF3376 at 196.062 kb on - strand, within GFF3376 at 196.070 kb on + strand, within GFF3376 at 196.071 kb on - strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.205 kb on + strand, within GFF3376 at 196.206 kb on - strand, within GFF3376 at 196.206 kb on - strand, within GFF3376 at 196.208 kb on + strand, within GFF3376 at 196.209 kb on - strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.397 kb on + strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.398 kb on - strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.400 kb on + strand, within GFF3376 at 196.401 kb on - strand, within GFF3376 at 196.475 kb on + strand, within GFF3376 at 196.485 kb on - strand, within GFF3376 at 196.660 kb on + strand, within GFF3376 at 196.660 kb on + strand, within GFF3376
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 193,476 + GFF3373 0.41 -0.5 193,476 + GFF3373 0.41 -0.2 193,477 - GFF3373 0.42 -0.3 193,858 - GFF3373 0.71 +0.9 194,007 + GFF3373 0.83 -0.1 194,007 + GFF3373 0.83 -1.1 194,008 - GFF3373 0.83 +1.9 194,274 + GFF3374 0.18 -0.6 194,274 + GFF3374 0.18 +0.3 194,275 - GFF3374 0.19 +0.6 194,275 - GFF3374 0.19 +2.4 194,483 - +0.3 194,740 + GFF3375 0.27 +1.1 194,740 + GFF3375 0.27 -0.0 194,741 - GFF3375 0.27 +0.5 194,741 - GFF3375 0.27 +0.7 194,741 - GFF3375 0.27 -0.4 195,175 + GFF3375 0.58 +0.0 195,176 - GFF3375 0.58 -0.1 195,176 - GFF3375 0.58 +0.1 195,271 + GFF3375 0.65 -0.9 195,272 - GFF3375 0.65 +0.7 195,272 - GFF3375 0.65 +0.0 195,272 - GFF3375 0.65 -0.1 195,272 - GFF3375 0.65 +0.1 195,394 + GFF3375 0.74 +0.2 195,394 + GFF3375 0.74 +0.0 195,395 - GFF3375 0.74 +0.6 195,436 + GFF3375 0.77 -1.2 195,550 + GFF3375 0.85 -0.0 195,550 + GFF3375 0.85 +1.3 195,550 + GFF3375 0.85 -0.2 195,550 + GFF3375 0.85 -0.8 195,550 + GFF3375 0.85 -0.2 195,550 + GFF3375 0.85 -0.7 195,551 - GFF3375 0.85 -0.7 195,884 + -0.0 195,884 + -0.5 195,885 - -0.0 196,061 + GFF3376 0.18 -1.3 196,062 - GFF3376 0.18 +0.5 196,070 + GFF3376 0.18 -0.1 196,071 - GFF3376 0.18 -1.0 196,205 + GFF3376 0.27 +0.1 196,205 + GFF3376 0.27 -0.6 196,205 + GFF3376 0.27 -0.4 196,206 - GFF3376 0.27 -1.2 196,206 - GFF3376 0.27 +0.2 196,208 + GFF3376 0.27 -0.0 196,209 - GFF3376 0.27 -0.2 196,397 + GFF3376 0.39 -0.2 196,397 + GFF3376 0.39 -0.6 196,397 + GFF3376 0.39 -0.5 196,398 - GFF3376 0.39 -0.2 196,398 - GFF3376 0.39 +0.2 196,398 - GFF3376 0.39 +0.1 196,398 - GFF3376 0.39 +0.0 196,400 + GFF3376 0.39 -0.5 196,400 + GFF3376 0.39 +0.3 196,400 + GFF3376 0.39 -0.3 196,401 - GFF3376 0.39 -1.7 196,475 + GFF3376 0.44 +0.3 196,485 - GFF3376 0.45 +1.0 196,660 + GFF3376 0.56 -0.2 196,660 + GFF3376 0.56 +0.5
Or see this region's nucleotide sequence