Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3370 and GFF3371 overlap by 17 nucleotides GFF3371 and GFF3372 overlap by 4 nucleotides GFF3372 and GFF3373 are separated by 66 nucleotides
GFF3370 - hypothetical protein, at 189,716 to 191,053
GFF3370
GFF3371 - FIG00456413: hypothetical protein, at 191,037 to 192,425
GFF3371
GFF3372 - hypothetical protein, at 192,422 to 192,874
GFF3372
GFF3373 - Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34), at 192,941 to 194,230
GFF3373
Position (kb) 191
192
193 Strain fitness (log2 ratio) -1
0
1
2 at 190.215 kb on - strand, within GFF3370 at 190.215 kb on - strand, within GFF3370 at 190.282 kb on + strand, within GFF3370 at 190.283 kb on - strand, within GFF3370 at 190.709 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.730 kb on + strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.731 kb on - strand, within GFF3370 at 190.763 kb on - strand, within GFF3370 at 190.857 kb on + strand, within GFF3370 at 190.857 kb on + strand, within GFF3370 at 191.038 kb on + strand at 191.038 kb on + strand at 191.039 kb on - strand at 191.083 kb on + strand at 191.083 kb on + strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.084 kb on - strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.087 kb on - strand at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.512 kb on + strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.513 kb on - strand, within GFF3371 at 191.566 kb on + strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.567 kb on - strand, within GFF3371 at 191.716 kb on + strand, within GFF3371 at 191.851 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.875 kb on + strand, within GFF3371 at 191.876 kb on - strand, within GFF3371 at 191.876 kb on - strand, within GFF3371 at 192.462 kb on + strand at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.480 kb on + strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.481 kb on - strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.693 kb on + strand, within GFF3372 at 192.694 kb on - strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.827 kb on + strand, within GFF3372 at 192.828 kb on - strand, within GFF3372 at 192.942 kb on + strand at 192.942 kb on + strand at 192.943 kb on - strand at 192.943 kb on - strand at 192.943 kb on - strand at 193.329 kb on + strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.330 kb on - strand, within GFF3373 at 193.350 kb on + strand, within GFF3373 at 193.350 kb on + strand, within GFF3373
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 190,215 - GFF3370 0.37 +1.3 190,215 - GFF3370 0.37 +0.9 190,282 + GFF3370 0.42 +1.0 190,283 - GFF3370 0.42 -0.8 190,709 + GFF3370 0.74 +0.4 190,730 + GFF3370 0.76 +0.6 190,730 + GFF3370 0.76 -1.5 190,730 + GFF3370 0.76 +0.4 190,730 + GFF3370 0.76 -0.5 190,731 - GFF3370 0.76 +0.1 190,731 - GFF3370 0.76 -0.8 190,731 - GFF3370 0.76 +0.3 190,763 - GFF3370 0.78 -0.3 190,857 + GFF3370 0.85 -0.3 190,857 + GFF3370 0.85 +0.0 191,038 + +0.3 191,038 + +0.7 191,039 - +1.4 191,083 + -0.7 191,083 + -1.0 191,084 - -0.4 191,084 - -1.0 191,084 - +0.9 191,084 - +1.9 191,086 + +0.4 191,086 + -0.1 191,086 + -0.7 191,086 + -0.6 191,087 - -0.2 191,512 + GFF3371 0.34 +1.4 191,512 + GFF3371 0.34 +0.3 191,512 + GFF3371 0.34 +0.0 191,512 + GFF3371 0.34 -1.5 191,512 + GFF3371 0.34 -0.3 191,512 + GFF3371 0.34 +0.3 191,512 + GFF3371 0.34 +0.9 191,512 + GFF3371 0.34 -1.1 191,512 + GFF3371 0.34 +0.0 191,512 + GFF3371 0.34 -1.0 191,513 - GFF3371 0.34 -0.9 191,513 - GFF3371 0.34 +0.2 191,513 - GFF3371 0.34 -0.9 191,513 - GFF3371 0.34 -1.0 191,566 + GFF3371 0.38 -0.4 191,567 - GFF3371 0.38 -0.6 191,567 - GFF3371 0.38 -0.0 191,716 + GFF3371 0.49 +0.0 191,851 + GFF3371 0.59 -0.2 191,875 + GFF3371 0.60 -0.4 191,875 + GFF3371 0.60 -0.3 191,876 - GFF3371 0.60 -0.7 191,876 - GFF3371 0.60 -0.6 192,462 + -1.3 192,480 + GFF3372 0.13 -0.4 192,480 + GFF3372 0.13 -0.3 192,480 + GFF3372 0.13 +1.3 192,480 + GFF3372 0.13 -0.6 192,481 - GFF3372 0.13 -0.3 192,481 - GFF3372 0.13 +0.4 192,481 - GFF3372 0.13 -0.1 192,481 - GFF3372 0.13 +0.1 192,693 + GFF3372 0.60 -0.1 192,693 + GFF3372 0.60 -0.3 192,694 - GFF3372 0.60 +2.3 192,827 + GFF3372 0.89 +0.5 192,827 + GFF3372 0.89 +0.1 192,827 + GFF3372 0.89 -0.1 192,828 - GFF3372 0.90 -0.1 192,942 + -1.5 192,942 + -0.8 192,943 - +1.9 192,943 - -0.3 192,943 - -0.1 193,329 + GFF3373 0.30 +2.3 193,330 - GFF3373 0.30 -0.1 193,330 - GFF3373 0.30 -1.1 193,350 + GFF3373 0.32 +0.3 193,350 + GFF3373 0.32 +0.2
Or see this region's nucleotide sequence