Strain Fitness in Variovorax sp. SCN45 around GFF3367

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3365 and GFF3366 are separated by 3 nucleotidesGFF3366 and GFF3367 are separated by 70 nucleotidesGFF3367 and GFF3368 are separated by 139 nucleotides GFF3365 - Cell division topological specificity factor MinE, at 185,702 to 185,980 GFF3365 GFF3366 - Septum site-determining protein MinD, at 185,984 to 186,799 GFF3366 GFF3367 - Septum site-determining protein MinC, at 186,870 to 187,643 GFF3367 GFF3368 - Pyrimidine permease, at 187,783 to 189,066 GFF3368 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.084 kb on + strand, within GFF3366at 186.085 kb on - strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.252 kb on + strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.253 kb on - strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.453 kb on + strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.454 kb on - strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.627 kb on + strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.628 kb on - strand, within GFF3366at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.967 kb on + strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 186.968 kb on - strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.072 kb on + strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.073 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.154 kb on - strand, within GFF3367at 187.637 kb on - strandat 187.811 kb on + strandat 187.811 kb on + strandat 187.811 kb on + strandat 187.812 kb on - strandat 187.812 kb on - strandat 187.812 kb on - strandat 188.117 kb on + strand, within GFF3368at 188.117 kb on + strand, within GFF3368at 188.117 kb on + strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.118 kb on - strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.156 kb on + strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.157 kb on - strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.234 kb on + strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.235 kb on - strand, within GFF3368at 188.447 kb on + strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.448 kb on - strand, within GFF3368at 188.585 kb on + strand, within GFF3368

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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186,084 + GFF3366 0.12 -0.6
186,084 + GFF3366 0.12 -0.4
186,084 + GFF3366 0.12 +0.0
186,085 - GFF3366 0.12 -0.9
186,252 + GFF3366 0.33 +0.6
186,252 + GFF3366 0.33 -0.7
186,253 - GFF3366 0.33 -0.8
186,253 - GFF3366 0.33 -0.3
186,253 - GFF3366 0.33 +0.5
186,253 - GFF3366 0.33 -0.5
186,253 - GFF3366 0.33 +0.9
186,453 + GFF3366 0.57 +0.5
186,453 + GFF3366 0.57 -1.4
186,453 + GFF3366 0.57 +1.4
186,453 + GFF3366 0.57 -0.6
186,454 - GFF3366 0.58 -1.7
186,454 - GFF3366 0.58 +0.9
186,454 - GFF3366 0.58 -0.6
186,454 - GFF3366 0.58 -0.1
186,454 - GFF3366 0.58 -0.2
186,627 + GFF3366 0.79 -1.4
186,627 + GFF3366 0.79 -0.3
186,627 + GFF3366 0.79 -1.7
186,627 + GFF3366 0.79 -0.7
186,628 - GFF3366 0.79 -0.4
186,628 - GFF3366 0.79 +1.0
186,628 - GFF3366 0.79 -0.9
186,967 + GFF3367 0.13 +0.6
186,967 + GFF3367 0.13 -0.9
186,967 + GFF3367 0.13 +0.3
186,967 + GFF3367 0.13 +0.2
186,967 + GFF3367 0.13 +0.6
186,968 - GFF3367 0.13 -0.9
186,968 - GFF3367 0.13 -0.5
186,968 - GFF3367 0.13 -0.1
186,968 - GFF3367 0.13 +1.5
186,968 - GFF3367 0.13 -0.3
187,072 + GFF3367 0.26 +0.1
187,072 + GFF3367 0.26 -0.7
187,073 - GFF3367 0.26 -0.6
187,073 - GFF3367 0.26 +0.6
187,073 - GFF3367 0.26 -1.6
187,073 - GFF3367 0.26 -0.9
187,073 - GFF3367 0.26 -0.9
187,154 - GFF3367 0.37 +1.9
187,154 - GFF3367 0.37 -0.3
187,154 - GFF3367 0.37 -0.8
187,154 - GFF3367 0.37 -0.4
187,154 - GFF3367 0.37 +0.5
187,637 - -0.9
187,811 + +0.1
187,811 + +0.5
187,811 + -0.3
187,812 - -0.5
187,812 - -0.3
187,812 - +0.1
188,117 + GFF3368 0.26 +0.2
188,117 + GFF3368 0.26 +1.0
188,117 + GFF3368 0.26 +0.7
188,118 - GFF3368 0.26 +0.9
188,118 - GFF3368 0.26 +0.2
188,118 - GFF3368 0.26 -0.2
188,118 - GFF3368 0.26 +0.8
188,118 - GFF3368 0.26 +0.2
188,156 + GFF3368 0.29 -0.6
188,156 + GFF3368 0.29 +0.3
188,156 + GFF3368 0.29 -0.3
188,156 + GFF3368 0.29 -0.4
188,156 + GFF3368 0.29 +0.4
188,156 + GFF3368 0.29 +1.3
188,156 + GFF3368 0.29 -0.1
188,156 + GFF3368 0.29 +1.9
188,156 + GFF3368 0.29 +0.6
188,157 - GFF3368 0.29 -0.7
188,157 - GFF3368 0.29 -0.7
188,157 - GFF3368 0.29 -1.8
188,157 - GFF3368 0.29 +0.4
188,157 - GFF3368 0.29 +1.4
188,157 - GFF3368 0.29 +0.4
188,157 - GFF3368 0.29 +0.1
188,157 - GFF3368 0.29 -0.1
188,157 - GFF3368 0.29 -1.7
188,234 + GFF3368 0.35 -0.3
188,234 + GFF3368 0.35 +0.5
188,234 + GFF3368 0.35 +1.9
188,235 - GFF3368 0.35 -0.6
188,235 - GFF3368 0.35 +0.6
188,235 - GFF3368 0.35 +0.4
188,235 - GFF3368 0.35 +0.2
188,235 - GFF3368 0.35 -0.1
188,235 - GFF3368 0.35 -0.5
188,235 - GFF3368 0.35 -0.8
188,235 - GFF3368 0.35 -0.8
188,235 - GFF3368 0.35 -0.5
188,235 - GFF3368 0.35 -0.4
188,235 - GFF3368 0.35 -1.7
188,235 - GFF3368 0.35 +0.8
188,447 + GFF3368 0.52 -0.9
188,448 - GFF3368 0.52 +0.1
188,448 - GFF3368 0.52 -0.0
188,448 - GFF3368 0.52 +0.6
188,448 - GFF3368 0.52 -0.0
188,585 + GFF3368 0.62 +0.7

Or see this region's nucleotide sequence