Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3343 and GFF3344 are separated by 58 nucleotides GFF3344 and GFF3345 are separated by 26 nucleotides GFF3345 and GFF3346 overlap by 4 nucleotides GFF3346 and GFF3347 are separated by 121 nucleotides
GFF3343 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 166,928 to 168,352
GFF3343
GFF3344 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 168,411 to 168,929
GFF3344
GFF3345 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), glycolate utilization, at 168,956 to 169,555
GFF3345
GFF3346 - hypothetical protein, at 169,552 to 169,914
GFF3346
GFF3347 - Adenylate cyclase (EC 4.6.1.1), at 170,036 to 170,557
GFF3347
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1 at 168.231 kb on - strand at 168.393 kb on + strand at 168.393 kb on + strand at 168.409 kb on + strand at 168.409 kb on + strand at 168.409 kb on + strand at 168.409 kb on + strand at 168.410 kb on - strand at 168.410 kb on - strand at 168.486 kb on + strand, within GFF3344 at 168.486 kb on + strand, within GFF3344 at 168.606 kb on + strand, within GFF3344 at 168.607 kb on - strand, within GFF3344 at 168.607 kb on - strand, within GFF3344 at 168.607 kb on - strand, within GFF3344 at 168.693 kb on + strand, within GFF3344 at 168.693 kb on + strand, within GFF3344 at 168.693 kb on + strand, within GFF3344 at 168.694 kb on - strand, within GFF3344 at 168.813 kb on + strand, within GFF3344 at 168.813 kb on + strand, within GFF3344 at 168.846 kb on + strand, within GFF3344 at 168.846 kb on + strand, within GFF3344 at 168.846 kb on + strand, within GFF3344 at 168.847 kb on - strand, within GFF3344 at 168.855 kb on - strand, within GFF3344 at 168.855 kb on - strand, within GFF3344 at 168.928 kb on - strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.933 kb on + strand at 168.934 kb on - strand at 168.934 kb on - strand at 168.934 kb on - strand at 168.934 kb on - strand at 168.934 kb on - strand at 168.937 kb on + strand at 168.937 kb on + strand at 168.937 kb on + strand at 168.937 kb on + strand at 168.937 kb on + strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 168.938 kb on - strand at 169.406 kb on + strand, within GFF3345 at 169.481 kb on + strand, within GFF3345 at 169.913 kb on - strand at 169.924 kb on - strand at 169.924 kb on - strand at 170.125 kb on - strand, within GFF3347 at 170.223 kb on - strand, within GFF3347 at 170.261 kb on + strand, within GFF3347 at 170.262 kb on - strand, within GFF3347 at 170.262 kb on - strand, within GFF3347 at 170.528 kb on + strand at 170.529 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 168,231 - +0.5 168,393 + -0.5 168,393 + +0.8 168,409 + +0.9 168,409 + +0.1 168,409 + -1.6 168,409 + -0.6 168,410 - -1.1 168,410 - -0.3 168,486 + GFF3344 0.14 -0.7 168,486 + GFF3344 0.14 -0.9 168,606 + GFF3344 0.38 +0.3 168,607 - GFF3344 0.38 -0.2 168,607 - GFF3344 0.38 -0.6 168,607 - GFF3344 0.38 +0.4 168,693 + GFF3344 0.54 -0.0 168,693 + GFF3344 0.54 -0.7 168,693 + GFF3344 0.54 +0.9 168,694 - GFF3344 0.55 -0.8 168,813 + GFF3344 0.77 +0.2 168,813 + GFF3344 0.77 -0.3 168,846 + GFF3344 0.84 -0.4 168,846 + GFF3344 0.84 -0.6 168,846 + GFF3344 0.84 -0.2 168,847 - GFF3344 0.84 -0.7 168,855 - GFF3344 0.86 -0.7 168,855 - GFF3344 0.86 -0.8 168,928 - +0.4 168,933 + +0.3 168,933 + +0.3 168,933 + -0.9 168,933 + -0.8 168,933 + -1.1 168,933 + -0.7 168,933 + +0.9 168,933 + +0.1 168,933 + +0.3 168,934 - -0.2 168,934 - -0.8 168,934 - -1.5 168,934 - -1.6 168,934 - -0.8 168,937 + +0.4 168,937 + -0.1 168,937 + +0.4 168,937 + -0.0 168,937 + -1.1 168,938 - +0.2 168,938 - +0.1 168,938 - -1.0 168,938 - -0.7 168,938 - -0.1 168,938 - +0.3 168,938 - +0.9 168,938 - -0.0 168,938 - -0.0 169,406 + GFF3345 0.75 -0.4 169,481 + GFF3345 0.88 -0.5 169,913 - -0.5 169,924 - +0.2 169,924 - -0.3 170,125 - GFF3347 0.17 +0.2 170,223 - GFF3347 0.36 +0.2 170,261 + GFF3347 0.43 +0.7 170,262 - GFF3347 0.43 -0.6 170,262 - GFF3347 0.43 -0.2 170,528 + -0.4 170,529 - -0.1
Or see this region's nucleotide sequence