Strain Fitness in Variovorax sp. SCN45 around GFF3343

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3342 and GFF3343 are separated by 96 nucleotidesGFF3343 and GFF3344 are separated by 58 nucleotidesGFF3344 and GFF3345 are separated by 26 nucleotides GFF3342 - FIG00347825: hypothetical protein, at 165,920 to 166,831 GFF3342 GFF3343 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 166,928 to 168,352 GFF3343 GFF3344 - Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains, at 168,411 to 168,929 GFF3344 GFF3345 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), glycolate utilization, at 168,956 to 169,555 GFF3345 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -2 -1 0 1 2at 165.973 kb on + strandat 166.139 kb on + strand, within GFF3342at 166.139 kb on + strand, within GFF3342at 166.160 kb on + strand, within GFF3342at 166.341 kb on - strand, within GFF3342at 166.608 kb on - strand, within GFF3342at 166.608 kb on - strand, within GFF3342at 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.772 kb on + strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 166.773 kb on - strandat 167.166 kb on + strand, within GFF3343at 167.167 kb on - strand, within GFF3343at 167.211 kb on + strand, within GFF3343at 167.212 kb on - strand, within GFF3343at 167.212 kb on - strand, within GFF3343at 167.212 kb on - strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.337 kb on + strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.338 kb on - strand, within GFF3343at 167.520 kb on + strand, within GFF3343at 167.520 kb on + strand, within GFF3343at 167.520 kb on + strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.521 kb on - strand, within GFF3343at 167.610 kb on - strand, within GFF3343at 167.670 kb on + strand, within GFF3343at 167.671 kb on - strand, within GFF3343at 167.671 kb on - strand, within GFF3343at 167.742 kb on + strand, within GFF3343at 168.231 kb on - strandat 168.393 kb on + strandat 168.393 kb on + strandat 168.409 kb on + strandat 168.409 kb on + strandat 168.409 kb on + strandat 168.409 kb on + strandat 168.410 kb on - strandat 168.410 kb on - strandat 168.486 kb on + strand, within GFF3344at 168.486 kb on + strand, within GFF3344at 168.606 kb on + strand, within GFF3344at 168.607 kb on - strand, within GFF3344at 168.607 kb on - strand, within GFF3344at 168.607 kb on - strand, within GFF3344at 168.693 kb on + strand, within GFF3344at 168.693 kb on + strand, within GFF3344at 168.693 kb on + strand, within GFF3344at 168.694 kb on - strand, within GFF3344at 168.813 kb on + strand, within GFF3344at 168.813 kb on + strand, within GFF3344at 168.846 kb on + strand, within GFF3344at 168.846 kb on + strand, within GFF3344at 168.846 kb on + strand, within GFF3344at 168.847 kb on - strand, within GFF3344at 168.855 kb on - strand, within GFF3344at 168.855 kb on - strand, within GFF3344at 168.928 kb on - strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.933 kb on + strandat 168.934 kb on - strandat 168.934 kb on - strandat 168.934 kb on - strandat 168.934 kb on - strandat 168.934 kb on - strandat 168.937 kb on + strandat 168.937 kb on + strandat 168.937 kb on + strandat 168.937 kb on + strandat 168.937 kb on + strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strandat 168.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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165,973 + +0.7
166,139 + GFF3342 0.24 -0.3
166,139 + GFF3342 0.24 -1.8
166,160 + GFF3342 0.26 +0.7
166,341 - GFF3342 0.46 +1.0
166,608 - GFF3342 0.75 -0.1
166,608 - GFF3342 0.75 -0.2
166,772 + +0.7
166,772 + -1.3
166,772 + -0.0
166,772 + -0.5
166,772 + -0.5
166,772 + -0.5
166,772 + +1.3
166,772 + +0.9
166,772 + +0.5
166,773 - -0.7
166,773 - -0.5
166,773 - +0.4
166,773 - -0.4
166,773 - -0.3
166,773 - +1.5
166,773 - +0.6
166,773 - -0.5
166,773 - +0.1
166,773 - +0.1
166,773 - -0.7
166,773 - +0.1
167,166 + GFF3343 0.17 +0.3
167,167 - GFF3343 0.17 +0.9
167,211 + GFF3343 0.20 -0.4
167,212 - GFF3343 0.20 -1.0
167,212 - GFF3343 0.20 +0.5
167,212 - GFF3343 0.20 -0.2
167,337 + GFF3343 0.29 -0.6
167,337 + GFF3343 0.29 -0.4
167,337 + GFF3343 0.29 -0.7
167,337 + GFF3343 0.29 +0.6
167,337 + GFF3343 0.29 -2.2
167,337 + GFF3343 0.29 -0.1
167,337 + GFF3343 0.29 -0.5
167,338 - GFF3343 0.29 +1.5
167,338 - GFF3343 0.29 -0.3
167,338 - GFF3343 0.29 -0.7
167,338 - GFF3343 0.29 -0.2
167,338 - GFF3343 0.29 -0.2
167,338 - GFF3343 0.29 -0.8
167,338 - GFF3343 0.29 -0.6
167,338 - GFF3343 0.29 +1.9
167,520 + GFF3343 0.42 -0.2
167,520 + GFF3343 0.42 -0.4
167,520 + GFF3343 0.42 -1.1
167,521 - GFF3343 0.42 -0.1
167,521 - GFF3343 0.42 +0.2
167,521 - GFF3343 0.42 +0.4
167,521 - GFF3343 0.42 +0.7
167,521 - GFF3343 0.42 -1.5
167,521 - GFF3343 0.42 -1.0
167,521 - GFF3343 0.42 -0.5
167,610 - GFF3343 0.48 +0.0
167,670 + GFF3343 0.52 -0.1
167,671 - GFF3343 0.52 -1.5
167,671 - GFF3343 0.52 -0.3
167,742 + GFF3343 0.57 +0.1
168,231 - +0.5
168,393 + -0.5
168,393 + +0.8
168,409 + +0.9
168,409 + +0.1
168,409 + -1.6
168,409 + -0.6
168,410 - -1.1
168,410 - -0.3
168,486 + GFF3344 0.14 -0.7
168,486 + GFF3344 0.14 -0.9
168,606 + GFF3344 0.38 +0.3
168,607 - GFF3344 0.38 -0.2
168,607 - GFF3344 0.38 -0.6
168,607 - GFF3344 0.38 +0.4
168,693 + GFF3344 0.54 -0.0
168,693 + GFF3344 0.54 -0.7
168,693 + GFF3344 0.54 +0.9
168,694 - GFF3344 0.55 -0.8
168,813 + GFF3344 0.77 +0.2
168,813 + GFF3344 0.77 -0.3
168,846 + GFF3344 0.84 -0.4
168,846 + GFF3344 0.84 -0.6
168,846 + GFF3344 0.84 -0.2
168,847 - GFF3344 0.84 -0.7
168,855 - GFF3344 0.86 -0.7
168,855 - GFF3344 0.86 -0.8
168,928 - +0.4
168,933 + +0.3
168,933 + +0.3
168,933 + -0.9
168,933 + -0.8
168,933 + -1.1
168,933 + -0.7
168,933 + +0.9
168,933 + +0.1
168,933 + +0.3
168,934 - -0.2
168,934 - -0.8
168,934 - -1.5
168,934 - -1.6
168,934 - -0.8
168,937 + +0.4
168,937 + -0.1
168,937 + +0.4
168,937 + -0.0
168,937 + -1.1
168,938 - +0.2
168,938 - +0.1
168,938 - -1.0
168,938 - -0.7
168,938 - -0.1
168,938 - +0.3
168,938 - +0.9
168,938 - -0.0
168,938 - -0.0

Or see this region's nucleotide sequence