Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3329 and GFF3330 overlap by 4 nucleotides GFF3330 and GFF3331 are separated by 158 nucleotides GFF3331 and GFF3332 are separated by 184 nucleotides
GFF3329 - Terpene utilization protein AtuA, at 155,050 to 156,858
GFF3329
GFF3330 - Isohexenylglutaconyl-CoA hydratase (EC 4.2.1.57), at 156,855 to 157,637
GFF3330
GFF3331 - Glutathione S-transferase (EC 2.5.1.18), at 157,796 to 158,404
GFF3331
GFF3332 - UPF0391 membrane protein RPC_2356, at 158,589 to 158,774
GFF3332
Position (kb) 156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.903 kb on + strand, within GFF3329 at 155.903 kb on + strand, within GFF3329 at 155.904 kb on - strand, within GFF3329 at 155.904 kb on - strand, within GFF3329 at 155.921 kb on + strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 155.922 kb on - strand, within GFF3329 at 156.399 kb on - strand, within GFF3329 at 156.399 kb on - strand, within GFF3329 at 156.399 kb on - strand, within GFF3329 at 156.677 kb on + strand, within GFF3329 at 156.677 kb on + strand, within GFF3329 at 156.741 kb on - strand at 156.755 kb on + strand at 156.755 kb on + strand at 156.756 kb on - strand at 156.756 kb on - strand at 156.756 kb on - strand at 156.756 kb on - strand at 156.756 kb on - strand at 156.756 kb on - strand at 156.756 kb on - strand at 157.003 kb on + strand, within GFF3330 at 157.003 kb on + strand, within GFF3330 at 157.003 kb on + strand, within GFF3330 at 157.003 kb on + strand, within GFF3330 at 157.003 kb on + strand, within GFF3330 at 157.003 kb on + strand, within GFF3330 at 157.004 kb on - strand, within GFF3330 at 157.004 kb on - strand, within GFF3330 at 157.004 kb on - strand, within GFF3330 at 157.004 kb on - strand, within GFF3330 at 157.382 kb on - strand, within GFF3330 at 157.393 kb on + strand, within GFF3330 at 157.393 kb on + strand, within GFF3330 at 157.797 kb on + strand at 157.798 kb on - strand at 157.798 kb on - strand at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.971 kb on + strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 157.972 kb on - strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.190 kb on + strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.191 kb on - strand, within GFF3331 at 158.254 kb on - strand, within GFF3331 at 158.254 kb on - strand, within GFF3331 at 158.254 kb on - strand, within GFF3331 at 158.254 kb on - strand, within GFF3331 at 158.274 kb on + strand, within GFF3331 at 158.274 kb on + strand, within GFF3331 at 158.274 kb on + strand, within GFF3331 at 158.275 kb on - strand, within GFF3331 at 158.275 kb on - strand, within GFF3331 at 158.275 kb on - strand, within GFF3331 at 158.278 kb on - strand, within GFF3331 at 158.391 kb on + strand at 158.391 kb on + strand at 158.392 kb on - strand at 158.392 kb on - strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.394 kb on + strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.395 kb on - strand at 158.412 kb on - strand at 158.412 kb on - strand at 158.412 kb on - strand at 158.464 kb on + strand at 158.464 kb on + strand at 158.496 kb on - strand at 158.496 kb on - strand at 158.543 kb on + strand at 158.543 kb on + strand at 158.543 kb on + strand at 158.543 kb on + strand at 158.544 kb on - strand at 158.544 kb on - strand at 158.544 kb on - strand at 158.544 kb on - strand at 158.598 kb on + strand at 158.598 kb on + strand at 158.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 155,903 + GFF3329 0.47 -0.1 155,903 + GFF3329 0.47 -0.4 155,904 - GFF3329 0.47 -0.5 155,904 - GFF3329 0.47 -2.0 155,921 + GFF3329 0.48 -0.3 155,922 - GFF3329 0.48 +0.3 155,922 - GFF3329 0.48 +0.2 155,922 - GFF3329 0.48 +0.5 155,922 - GFF3329 0.48 -0.3 155,922 - GFF3329 0.48 -0.1 155,922 - GFF3329 0.48 +0.5 155,922 - GFF3329 0.48 -0.6 156,399 - GFF3329 0.75 -0.3 156,399 - GFF3329 0.75 -0.4 156,399 - GFF3329 0.75 -0.1 156,677 + GFF3329 0.90 +1.2 156,677 + GFF3329 0.90 -0.4 156,741 - +1.0 156,755 + +0.1 156,755 + -0.2 156,756 - -0.9 156,756 - -1.1 156,756 - -0.6 156,756 - +0.9 156,756 - +0.9 156,756 - -0.2 156,756 - +0.1 157,003 + GFF3330 0.19 -0.7 157,003 + GFF3330 0.19 -0.9 157,003 + GFF3330 0.19 +0.3 157,003 + GFF3330 0.19 -0.0 157,003 + GFF3330 0.19 -0.7 157,003 + GFF3330 0.19 +1.9 157,004 - GFF3330 0.19 -0.2 157,004 - GFF3330 0.19 -1.2 157,004 - GFF3330 0.19 -0.9 157,004 - GFF3330 0.19 -0.1 157,382 - GFF3330 0.67 -1.2 157,393 + GFF3330 0.69 -1.2 157,393 + GFF3330 0.69 +0.5 157,797 + -0.7 157,798 - +0.1 157,798 - +0.7 157,971 + GFF3331 0.29 -0.5 157,971 + GFF3331 0.29 -0.8 157,971 + GFF3331 0.29 -0.6 157,971 + GFF3331 0.29 -0.7 157,971 + GFF3331 0.29 -0.2 157,971 + GFF3331 0.29 +0.0 157,971 + GFF3331 0.29 -0.1 157,971 + GFF3331 0.29 -0.5 157,972 - GFF3331 0.29 -0.7 157,972 - GFF3331 0.29 +0.9 157,972 - GFF3331 0.29 -0.4 157,972 - GFF3331 0.29 +0.3 157,972 - GFF3331 0.29 +0.7 157,972 - GFF3331 0.29 +1.5 158,190 + GFF3331 0.65 -0.3 158,190 + GFF3331 0.65 -0.1 158,190 + GFF3331 0.65 -0.6 158,190 + GFF3331 0.65 -1.3 158,190 + GFF3331 0.65 +0.1 158,190 + GFF3331 0.65 -0.9 158,190 + GFF3331 0.65 -1.0 158,191 - GFF3331 0.65 -0.7 158,191 - GFF3331 0.65 +0.4 158,191 - GFF3331 0.65 +0.9 158,191 - GFF3331 0.65 -0.3 158,191 - GFF3331 0.65 -0.6 158,191 - GFF3331 0.65 -0.4 158,191 - GFF3331 0.65 +0.0 158,254 - GFF3331 0.75 -1.2 158,254 - GFF3331 0.75 -0.5 158,254 - GFF3331 0.75 -0.1 158,254 - GFF3331 0.75 +0.3 158,274 + GFF3331 0.78 -0.5 158,274 + GFF3331 0.78 -0.3 158,274 + GFF3331 0.78 -0.5 158,275 - GFF3331 0.79 -0.4 158,275 - GFF3331 0.79 -1.0 158,275 - GFF3331 0.79 -0.7 158,278 - GFF3331 0.79 +1.2 158,391 + -0.3 158,391 + -1.1 158,392 - +1.7 158,392 - +0.3 158,394 + +0.3 158,394 + -1.2 158,394 + -0.6 158,394 + -0.5 158,394 + -0.4 158,394 + -0.1 158,394 + -0.1 158,394 + -0.9 158,394 + +0.1 158,394 + +0.8 158,394 + +0.1 158,395 - -0.2 158,395 - -0.1 158,395 - +0.1 158,395 - -0.4 158,395 - +0.4 158,395 - +0.9 158,395 - -1.6 158,395 - +0.3 158,395 - +1.9 158,395 - +0.2 158,395 - -0.9 158,395 - +0.4 158,412 - -0.2 158,412 - -1.5 158,412 - +0.5 158,464 + +0.1 158,464 + -0.6 158,496 - -0.8 158,496 - -0.6 158,543 + -0.8 158,543 + -1.9 158,543 + -0.1 158,543 + -0.4 158,544 - -0.9 158,544 - -0.4 158,544 - -1.5 158,544 - +0.2 158,598 + +1.3 158,598 + +0.5 158,599 - +0.8
Or see this region's nucleotide sequence