Strain Fitness in Variovorax sp. SCN45 around GFF3244

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3243 and GFF3244 are separated by 10 nucleotidesGFF3244 and GFF3245 overlap by 4 nucleotidesGFF3245 and GFF3246 are separated by 57 nucleotides GFF3243 - Flavin containing amine oxidoreductase, at 57,220 to 58,851 GFF3243 GFF3244 - Spermidine synthase N-terminal extension / Spermidine synthase (EC 2.5.1.16), at 58,862 to 60,505 GFF3244 GFF3245 - hypothetical protein, at 60,502 to 60,720 GFF3245 GFF3246 - hypothetical protein, at 60,778 to 62,268 GFF3246 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.068 kb on - strand, within GFF3243at 58.068 kb on - strand, within GFF3243at 58.068 kb on - strand, within GFF3243at 58.101 kb on + strand, within GFF3243at 58.113 kb on - strand, within GFF3243at 58.131 kb on - strand, within GFF3243at 58.131 kb on - strand, within GFF3243at 58.139 kb on + strand, within GFF3243at 58.139 kb on + strand, within GFF3243at 58.242 kb on + strand, within GFF3243at 58.242 kb on + strand, within GFF3243at 58.242 kb on + strand, within GFF3243at 58.243 kb on - strand, within GFF3243at 58.243 kb on - strand, within GFF3243at 58.282 kb on - strand, within GFF3243at 58.301 kb on + strand, within GFF3243at 58.412 kb on + strand, within GFF3243at 58.413 kb on - strand, within GFF3243at 58.503 kb on - strand, within GFF3243at 58.896 kb on + strandat 58.897 kb on - strandat 58.944 kb on - strandat 59.061 kb on + strand, within GFF3244at 59.061 kb on + strand, within GFF3244at 59.061 kb on + strand, within GFF3244at 59.061 kb on + strand, within GFF3244at 59.062 kb on - strand, within GFF3244at 59.062 kb on - strand, within GFF3244at 59.062 kb on - strand, within GFF3244at 59.062 kb on - strand, within GFF3244at 59.097 kb on + strand, within GFF3244at 59.098 kb on - strand, within GFF3244at 59.194 kb on - strand, within GFF3244at 59.244 kb on + strand, within GFF3244at 59.245 kb on - strand, within GFF3244at 59.245 kb on - strand, within GFF3244at 59.245 kb on - strand, within GFF3244at 59.301 kb on + strand, within GFF3244at 59.301 kb on + strand, within GFF3244at 59.302 kb on - strand, within GFF3244at 59.556 kb on + strand, within GFF3244at 59.556 kb on + strand, within GFF3244at 59.556 kb on + strand, within GFF3244at 59.556 kb on + strand, within GFF3244at 59.557 kb on - strand, within GFF3244at 59.557 kb on - strand, within GFF3244at 59.662 kb on - strand, within GFF3244at 59.752 kb on - strand, within GFF3244at 59.787 kb on + strand, within GFF3244at 59.788 kb on - strand, within GFF3244at 59.788 kb on - strand, within GFF3244at 60.033 kb on + strand, within GFF3244at 60.033 kb on + strand, within GFF3244at 60.033 kb on + strand, within GFF3244at 60.034 kb on - strand, within GFF3244at 60.180 kb on + strand, within GFF3244at 60.181 kb on - strand, within GFF3244at 60.280 kb on - strand, within GFF3244at 60.318 kb on + strand, within GFF3244at 60.318 kb on + strand, within GFF3244at 60.319 kb on - strand, within GFF3244at 60.319 kb on - strand, within GFF3244at 60.319 kb on - strand, within GFF3244at 60.319 kb on - strand, within GFF3244at 60.319 kb on - strand, within GFF3244at 60.366 kb on + strandat 60.366 kb on + strandat 60.366 kb on + strandat 60.367 kb on - strandat 60.367 kb on - strandat 60.396 kb on + strandat 60.397 kb on - strandat 60.608 kb on + strand, within GFF3245at 60.609 kb on - strand, within GFF3245at 60.609 kb on - strand, within GFF3245at 60.609 kb on - strand, within GFF3245at 60.609 kb on - strand, within GFF3245at 60.609 kb on - strand, within GFF3245at 60.671 kb on + strand, within GFF3245at 60.671 kb on + strand, within GFF3245at 60.672 kb on - strand, within GFF3245at 60.736 kb on + strandat 60.736 kb on + strandat 60.736 kb on + strandat 60.736 kb on + strandat 60.737 kb on - strandat 60.737 kb on - strandat 60.737 kb on - strandat 60.739 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.747 kb on + strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.748 kb on - strandat 60.803 kb on + strandat 60.804 kb on - strandat 61.100 kb on + strand, within GFF3246at 61.100 kb on + strand, within GFF3246at 61.101 kb on - strand, within GFF3246at 61.142 kb on + strand, within GFF3246at 61.143 kb on - strand, within GFF3246at 61.143 kb on - strand, within GFF3246at 61.143 kb on - strand, within GFF3246at 61.160 kb on + strand, within GFF3246at 61.160 kb on + strand, within GFF3246at 61.160 kb on + strand, within GFF3246at 61.178 kb on + strand, within GFF3246at 61.179 kb on - strand, within GFF3246at 61.179 kb on - strand, within GFF3246at 61.179 kb on - strand, within GFF3246at 61.179 kb on - strand, within GFF3246at 61.184 kb on + strand, within GFF3246at 61.184 kb on + strand, within GFF3246at 61.184 kb on + strand, within GFF3246at 61.184 kb on + strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.185 kb on - strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.211 kb on + strand, within GFF3246at 61.212 kb on - strand, within GFF3246at 61.322 kb on + strand, within GFF3246at 61.322 kb on + strand, within GFF3246at 61.322 kb on + strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.323 kb on - strand, within GFF3246at 61.331 kb on + strand, within GFF3246at 61.332 kb on - strand, within GFF3246at 61.332 kb on - strand, within GFF3246at 61.332 kb on - strand, within GFF3246

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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58,068 - GFF3243 0.52 -0.1
58,068 - GFF3243 0.52 +1.2
58,068 - GFF3243 0.52 -0.5
58,101 + GFF3243 0.54 -0.3
58,113 - GFF3243 0.55 -0.5
58,131 - GFF3243 0.56 +0.7
58,131 - GFF3243 0.56 -1.1
58,139 + GFF3243 0.56 -0.4
58,139 + GFF3243 0.56 +0.0
58,242 + GFF3243 0.63 -0.2
58,242 + GFF3243 0.63 -1.2
58,242 + GFF3243 0.63 +0.9
58,243 - GFF3243 0.63 -0.1
58,243 - GFF3243 0.63 -2.5
58,282 - GFF3243 0.65 +0.2
58,301 + GFF3243 0.66 +0.5
58,412 + GFF3243 0.73 -0.5
58,413 - GFF3243 0.73 -0.4
58,503 - GFF3243 0.79 +0.0
58,896 + +0.6
58,897 - -0.1
58,944 - -0.6
59,061 + GFF3244 0.12 +0.7
59,061 + GFF3244 0.12 +0.1
59,061 + GFF3244 0.12 -0.5
59,061 + GFF3244 0.12 +0.5
59,062 - GFF3244 0.12 -0.3
59,062 - GFF3244 0.12 -0.0
59,062 - GFF3244 0.12 -0.2
59,062 - GFF3244 0.12 +0.2
59,097 + GFF3244 0.14 -0.3
59,098 - GFF3244 0.14 +0.4
59,194 - GFF3244 0.20 -0.4
59,244 + GFF3244 0.23 -0.0
59,245 - GFF3244 0.23 +1.1
59,245 - GFF3244 0.23 +0.1
59,245 - GFF3244 0.23 +0.5
59,301 + GFF3244 0.27 +0.5
59,301 + GFF3244 0.27 +0.1
59,302 - GFF3244 0.27 -1.7
59,556 + GFF3244 0.42 -0.2
59,556 + GFF3244 0.42 -0.9
59,556 + GFF3244 0.42 -0.9
59,556 + GFF3244 0.42 -0.9
59,557 - GFF3244 0.42 -0.1
59,557 - GFF3244 0.42 +0.1
59,662 - GFF3244 0.49 -0.1
59,752 - GFF3244 0.54 -0.3
59,787 + GFF3244 0.56 -0.1
59,788 - GFF3244 0.56 -0.9
59,788 - GFF3244 0.56 -0.0
60,033 + GFF3244 0.71 -0.5
60,033 + GFF3244 0.71 -0.1
60,033 + GFF3244 0.71 +1.9
60,034 - GFF3244 0.71 -1.8
60,180 + GFF3244 0.80 -0.5
60,181 - GFF3244 0.80 -0.1
60,280 - GFF3244 0.86 +0.0
60,318 + GFF3244 0.89 +0.5
60,318 + GFF3244 0.89 -1.0
60,319 - GFF3244 0.89 +0.1
60,319 - GFF3244 0.89 +0.5
60,319 - GFF3244 0.89 -0.3
60,319 - GFF3244 0.89 +0.7
60,319 - GFF3244 0.89 -0.5
60,366 + -0.7
60,366 + -0.5
60,366 + +0.0
60,367 - -0.0
60,367 - +1.1
60,396 + -1.1
60,397 - +1.1
60,608 + GFF3245 0.48 -0.3
60,609 - GFF3245 0.49 +0.9
60,609 - GFF3245 0.49 -0.1
60,609 - GFF3245 0.49 +0.4
60,609 - GFF3245 0.49 +0.1
60,609 - GFF3245 0.49 +1.9
60,671 + GFF3245 0.77 -0.8
60,671 + GFF3245 0.77 -1.1
60,672 - GFF3245 0.78 -0.3
60,736 + +0.8
60,736 + -0.1
60,736 + -0.7
60,736 + +0.5
60,737 - -0.2
60,737 - -0.2
60,737 - -0.7
60,739 + -0.2
60,747 + +0.4
60,747 + -0.1
60,747 + -0.2
60,747 + +0.1
60,747 + -0.9
60,747 + +1.4
60,747 + +0.3
60,747 + -0.2
60,747 + -0.3
60,747 + -0.5
60,748 - -0.8
60,748 - +0.3
60,748 - +0.1
60,748 - +0.9
60,748 - -0.7
60,748 - -0.3
60,748 - -0.9
60,748 - -1.3
60,748 - -0.2
60,803 + +0.0
60,804 - +0.6
61,100 + GFF3246 0.22 +0.2
61,100 + GFF3246 0.22 -0.8
61,101 - GFF3246 0.22 -0.3
61,142 + GFF3246 0.24 -0.1
61,143 - GFF3246 0.24 +1.3
61,143 - GFF3246 0.24 +0.0
61,143 - GFF3246 0.24 -0.1
61,160 + GFF3246 0.26 -0.1
61,160 + GFF3246 0.26 -0.1
61,160 + GFF3246 0.26 -0.3
61,178 + GFF3246 0.27 +0.2
61,179 - GFF3246 0.27 +0.1
61,179 - GFF3246 0.27 -0.6
61,179 - GFF3246 0.27 -0.5
61,179 - GFF3246 0.27 -0.4
61,184 + GFF3246 0.27 -0.4
61,184 + GFF3246 0.27 +1.1
61,184 + GFF3246 0.27 -0.3
61,184 + GFF3246 0.27 -0.5
61,185 - GFF3246 0.27 -1.1
61,185 - GFF3246 0.27 -0.5
61,185 - GFF3246 0.27 +0.2
61,185 - GFF3246 0.27 +0.4
61,185 - GFF3246 0.27 +0.2
61,185 - GFF3246 0.27 -0.6
61,211 + GFF3246 0.29 -0.1
61,211 + GFF3246 0.29 +0.1
61,211 + GFF3246 0.29 +0.0
61,211 + GFF3246 0.29 +0.9
61,211 + GFF3246 0.29 +0.9
61,211 + GFF3246 0.29 -0.5
61,212 - GFF3246 0.29 +0.5
61,322 + GFF3246 0.36 -0.1
61,322 + GFF3246 0.36 +0.3
61,322 + GFF3246 0.36 -0.9
61,323 - GFF3246 0.37 +0.1
61,323 - GFF3246 0.37 +0.5
61,323 - GFF3246 0.37 +0.1
61,323 - GFF3246 0.37 +0.0
61,323 - GFF3246 0.37 +0.5
61,323 - GFF3246 0.37 -0.6
61,331 + GFF3246 0.37 +0.0
61,332 - GFF3246 0.37 -0.5
61,332 - GFF3246 0.37 +0.0
61,332 - GFF3246 0.37 +0.2

Or see this region's nucleotide sequence