Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3195 and GFF3196 are separated by 557 nucleotides GFF3196 and GFF3197 are separated by 76 nucleotides GFF3197 and GFF3198 are separated by 61 nucleotides
GFF3195 - hypothetical protein, at 11,635 to 13,614
GFF3195
GFF3196 - Metallophosphoesterase, at 14,172 to 15,098
GFF3196
GFF3197 - hypothetical protein, at 15,175 to 15,642
GFF3197
GFF3198 - hypothetical protein, at 15,704 to 16,156
GFF3198
Position (kb) 14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.219 kb on + strand, within GFF3195 at 13.219 kb on + strand, within GFF3195 at 13.220 kb on - strand, within GFF3195 at 13.289 kb on + strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.290 kb on - strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.353 kb on + strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.354 kb on - strand, within GFF3195 at 13.458 kb on - strand at 13.458 kb on - strand at 13.468 kb on - strand at 13.468 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.558 kb on - strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.559 kb on + strand at 13.560 kb on - strand at 13.605 kb on + strand at 13.606 kb on - strand at 13.606 kb on - strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.634 kb on + strand at 13.635 kb on - strand at 13.732 kb on + strand at 13.733 kb on - strand at 13.733 kb on - strand at 13.735 kb on + strand at 13.812 kb on + strand at 13.812 kb on + strand at 13.813 kb on - strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.823 kb on + strand at 13.824 kb on - strand at 13.824 kb on - strand at 13.873 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.923 kb on + strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.924 kb on - strand at 13.926 kb on + strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.927 kb on - strand at 13.936 kb on + strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 13.972 kb on - strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.055 kb on + strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.056 kb on - strand at 14.338 kb on + strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.339 kb on - strand, within GFF3196 at 14.421 kb on + strand, within GFF3196 at 14.490 kb on + strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.491 kb on - strand, within GFF3196 at 14.818 kb on - strand, within GFF3196 at 14.818 kb on - strand, within GFF3196 at 14.921 kb on + strand, within GFF3196 at 14.921 kb on + strand, within GFF3196 at 14.922 kb on - strand, within GFF3196 at 14.922 kb on - strand, within GFF3196 at 15.028 kb on + strand at 15.081 kb on + strand at 15.081 kb on + strand at 15.082 kb on - strand at 15.082 kb on - strand at 15.094 kb on + strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.095 kb on - strand at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.241 kb on + strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.242 kb on - strand, within GFF3197 at 15.355 kb on + strand, within GFF3197 at 15.356 kb on - strand, within GFF3197 at 15.445 kb on + strand, within GFF3197 at 15.869 kb on + strand, within GFF3198
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,219 + GFF3195 0.80 -0.4 13,219 + GFF3195 0.80 -0.5 13,220 - GFF3195 0.80 +0.4 13,289 + GFF3195 0.84 -0.5 13,290 - GFF3195 0.84 -0.2 13,290 - GFF3195 0.84 -0.8 13,353 + GFF3195 0.87 +0.1 13,353 + GFF3195 0.87 -1.5 13,353 + GFF3195 0.87 -0.6 13,354 - GFF3195 0.87 +0.0 13,354 - GFF3195 0.87 -1.8 13,354 - GFF3195 0.87 -0.8 13,354 - GFF3195 0.87 -1.2 13,354 - GFF3195 0.87 -0.7 13,354 - GFF3195 0.87 -0.1 13,354 - GFF3195 0.87 -0.4 13,458 - -0.6 13,458 - +0.7 13,468 - -0.2 13,468 - +1.9 13,558 - -0.6 13,558 - -1.0 13,558 - -0.5 13,558 - -0.5 13,559 + -0.1 13,559 + -0.7 13,559 + +0.2 13,560 - -0.5 13,605 + -0.9 13,606 - -1.7 13,606 - -0.8 13,634 + +1.9 13,634 + +0.1 13,634 + -0.4 13,634 + -0.3 13,635 - +0.1 13,732 + +0.5 13,733 - -2.1 13,733 - -0.0 13,735 + -0.1 13,812 + -0.7 13,812 + -0.7 13,813 - -1.0 13,823 + -1.7 13,823 + +0.1 13,823 + -0.0 13,824 - -0.1 13,824 - -0.8 13,873 + +0.5 13,923 + +0.5 13,923 + +0.0 13,923 + +0.3 13,923 + -0.6 13,923 + -0.0 13,923 + -1.2 13,923 + -0.2 13,923 + -0.1 13,923 + -0.4 13,923 + -1.1 13,924 - -0.6 13,924 - +0.3 13,924 - -0.6 13,924 - -0.1 13,924 - -0.8 13,926 + +0.1 13,927 - -0.1 13,927 - -0.3 13,927 - -0.6 13,936 + +0.9 13,972 - -0.4 13,972 - -0.9 13,972 - +0.2 13,972 - -0.1 14,055 + -0.1 14,055 + +0.6 14,055 + +0.8 14,055 + -0.0 14,055 + +1.3 14,055 + -1.3 14,056 - -1.0 14,056 - -0.1 14,056 - +0.1 14,056 - +0.3 14,056 - -0.0 14,056 - +0.2 14,056 - -0.5 14,056 - +0.1 14,056 - -0.9 14,056 - -2.0 14,338 + GFF3196 0.18 +0.9 14,339 - GFF3196 0.18 -0.7 14,339 - GFF3196 0.18 -0.8 14,339 - GFF3196 0.18 -0.9 14,339 - GFF3196 0.18 -1.0 14,339 - GFF3196 0.18 +0.1 14,339 - GFF3196 0.18 -0.6 14,339 - GFF3196 0.18 -0.5 14,421 + GFF3196 0.27 -0.5 14,490 + GFF3196 0.34 +0.4 14,491 - GFF3196 0.34 -1.5 14,491 - GFF3196 0.34 -0.5 14,818 - GFF3196 0.70 +0.2 14,818 - GFF3196 0.70 +0.3 14,921 + GFF3196 0.81 +0.5 14,921 + GFF3196 0.81 -1.6 14,922 - GFF3196 0.81 -0.3 14,922 - GFF3196 0.81 +0.0 15,028 + -1.4 15,081 + -0.9 15,081 + +0.9 15,082 - -0.4 15,082 - -0.7 15,094 + -0.7 15,095 - +0.4 15,095 - -1.4 15,095 - -0.3 15,095 - -0.4 15,095 - +0.1 15,095 - +0.6 15,241 + GFF3197 0.14 -0.9 15,241 + GFF3197 0.14 -0.1 15,241 + GFF3197 0.14 -0.8 15,241 + GFF3197 0.14 +0.2 15,241 + GFF3197 0.14 -0.9 15,241 + GFF3197 0.14 -0.1 15,241 + GFF3197 0.14 -2.9 15,241 + GFF3197 0.14 -0.9 15,241 + GFF3197 0.14 -0.9 15,241 + GFF3197 0.14 -0.1 15,241 + GFF3197 0.14 -0.4 15,241 + GFF3197 0.14 +0.1 15,241 + GFF3197 0.14 -0.1 15,241 + GFF3197 0.14 -0.6 15,241 + GFF3197 0.14 +0.2 15,242 - GFF3197 0.14 +0.3 15,242 - GFF3197 0.14 -0.7 15,242 - GFF3197 0.14 -0.2 15,242 - GFF3197 0.14 +0.5 15,242 - GFF3197 0.14 +0.1 15,242 - GFF3197 0.14 +0.1 15,242 - GFF3197 0.14 -0.7 15,242 - GFF3197 0.14 +0.2 15,242 - GFF3197 0.14 -0.2 15,355 + GFF3197 0.38 -0.5 15,356 - GFF3197 0.39 +0.3 15,445 + GFF3197 0.58 -0.0 15,869 + GFF3198 0.36 +0.5
Or see this region's nucleotide sequence