Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3189 and GFF3190 are separated by 635 nucleotides GFF3190 and GFF3191 are separated by 138 nucleotides GFF3191 and GFF3192 overlap by 4 nucleotides
GFF3189 - hypothetical protein, at 4,709 to 5,812
GFF3189
GFF3190 - FIG01046500: hypothetical protein, at 6,448 to 7,791
GFF3190
GFF3191 - no description, at 7,930 to 8,658
GFF3191
GFF3192 - hypothetical protein, at 8,655 to 9,932
GFF3192
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.474 kb on + strand, within GFF3189 at 5.475 kb on - strand, within GFF3189 at 5.475 kb on - strand, within GFF3189 at 5.496 kb on + strand, within GFF3189 at 5.497 kb on - strand, within GFF3189 at 5.497 kb on - strand, within GFF3189 at 5.534 kb on + strand, within GFF3189 at 5.534 kb on + strand, within GFF3189 at 5.535 kb on - strand, within GFF3189 at 5.605 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.620 kb on + strand, within GFF3189 at 5.638 kb on + strand, within GFF3189 at 5.677 kb on - strand, within GFF3189 at 5.716 kb on + strand at 5.717 kb on - strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.726 kb on + strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.727 kb on - strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.825 kb on + strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.826 kb on - strand at 5.870 kb on + strand at 5.870 kb on + strand at 5.871 kb on - strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.927 kb on + strand at 5.928 kb on - strand at 5.928 kb on - strand at 5.928 kb on - strand at 6.022 kb on + strand at 6.023 kb on - strand at 6.023 kb on - strand at 6.091 kb on - strand at 6.091 kb on - strand at 6.192 kb on + strand at 6.193 kb on - strand at 6.193 kb on - strand at 6.207 kb on + strand at 6.208 kb on - strand at 6.281 kb on - strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.336 kb on + strand at 6.337 kb on - strand at 6.337 kb on - strand at 6.337 kb on - strand at 6.401 kb on - strand at 6.401 kb on - strand at 6.413 kb on - strand at 6.430 kb on + strand at 6.435 kb on + strand at 6.435 kb on + strand at 6.435 kb on + strand at 6.436 kb on - strand at 6.436 kb on - strand at 6.469 kb on + strand at 6.469 kb on + strand at 6.469 kb on + strand at 6.746 kb on + strand, within GFF3190 at 6.747 kb on - strand, within GFF3190 at 6.747 kb on - strand, within GFF3190 at 7.037 kb on + strand, within GFF3190 at 7.037 kb on + strand, within GFF3190 at 7.038 kb on - strand, within GFF3190 at 7.038 kb on - strand, within GFF3190 at 7.038 kb on - strand, within GFF3190 at 7.038 kb on - strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.075 kb on + strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.076 kb on - strand, within GFF3190 at 7.104 kb on + strand, within GFF3190 at 7.104 kb on + strand, within GFF3190 at 7.104 kb on + strand, within GFF3190 at 7.105 kb on - strand, within GFF3190 at 7.105 kb on - strand, within GFF3190 at 7.318 kb on + strand, within GFF3190 at 7.327 kb on - strand, within GFF3190 at 7.327 kb on - strand, within GFF3190 at 7.330 kb on + strand, within GFF3190 at 7.330 kb on + strand, within GFF3190 at 7.330 kb on + strand, within GFF3190 at 7.330 kb on + strand, within GFF3190 at 7.331 kb on - strand, within GFF3190 at 7.331 kb on - strand, within GFF3190 at 7.357 kb on + strand, within GFF3190 at 7.358 kb on - strand, within GFF3190 at 7.358 kb on - strand, within GFF3190 at 7.525 kb on - strand, within GFF3190 at 7.540 kb on + strand, within GFF3190 at 7.540 kb on + strand, within GFF3190 at 7.541 kb on - strand, within GFF3190 at 7.541 kb on - strand, within GFF3190 at 7.563 kb on + strand, within GFF3190 at 7.563 kb on + strand, within GFF3190 at 7.563 kb on + strand, within GFF3190 at 7.564 kb on - strand, within GFF3190 at 7.630 kb on + strand, within GFF3190 at 7.630 kb on + strand, within GFF3190 at 7.631 kb on - strand, within GFF3190 at 7.708 kb on + strand at 7.709 kb on - strand at 7.927 kb on + strand at 7.927 kb on + strand at 7.928 kb on - strand at 7.928 kb on - strand at 7.943 kb on + strand at 7.943 kb on + strand at 7.944 kb on - strand at 7.944 kb on - strand at 7.944 kb on - strand at 8.111 kb on + strand, within GFF3191 at 8.112 kb on - strand, within GFF3191 at 8.144 kb on + strand, within GFF3191 at 8.144 kb on + strand, within GFF3191 at 8.251 kb on - strand, within GFF3191 at 8.251 kb on - strand, within GFF3191 at 8.251 kb on - strand, within GFF3191 at 8.251 kb on - strand, within GFF3191 at 8.339 kb on + strand, within GFF3191 at 8.367 kb on + strand, within GFF3191 at 8.367 kb on + strand, within GFF3191 at 8.368 kb on - strand, within GFF3191 at 8.368 kb on - strand, within GFF3191 at 8.368 kb on - strand, within GFF3191 at 8.408 kb on + strand, within GFF3191 at 8.469 kb on + strand, within GFF3191 at 8.469 kb on + strand, within GFF3191 at 8.470 kb on - strand, within GFF3191 at 8.470 kb on - strand, within GFF3191 at 8.471 kb on + strand, within GFF3191 at 8.471 kb on + strand, within GFF3191 at 8.471 kb on + strand, within GFF3191 at 8.471 kb on + strand, within GFF3191 at 8.471 kb on + strand, within GFF3191 at 8.472 kb on - strand, within GFF3191 at 8.472 kb on - strand, within GFF3191 at 8.472 kb on - strand, within GFF3191 at 8.676 kb on - strand at 8.676 kb on - strand at 8.685 kb on + strand at 8.685 kb on + strand at 8.686 kb on - strand at 8.686 kb on - strand at 8.763 kb on + strand at 8.764 kb on - strand at 8.771 kb on + strand at 8.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 5,474 + GFF3189 0.69 +0.1 5,474 + GFF3189 0.69 +0.3 5,474 + GFF3189 0.69 -0.4 5,474 + GFF3189 0.69 -0.2 5,474 + GFF3189 0.69 +0.3 5,474 + GFF3189 0.69 -1.0 5,475 - GFF3189 0.69 -0.1 5,475 - GFF3189 0.69 -0.3 5,496 + GFF3189 0.71 +1.9 5,497 - GFF3189 0.71 -0.5 5,497 - GFF3189 0.71 +1.1 5,534 + GFF3189 0.75 +0.9 5,534 + GFF3189 0.75 -0.6 5,535 - GFF3189 0.75 +1.5 5,605 + GFF3189 0.81 +0.3 5,620 + GFF3189 0.83 +0.6 5,620 + GFF3189 0.83 -0.5 5,620 + GFF3189 0.83 -0.2 5,638 + GFF3189 0.84 +1.0 5,677 - GFF3189 0.88 -0.3 5,716 + +0.1 5,717 - -0.1 5,726 + +0.8 5,726 + -0.4 5,726 + -0.8 5,726 + -0.4 5,727 - -0.8 5,727 - -0.5 5,727 - +0.3 5,727 - -0.1 5,825 + -0.2 5,825 + -1.5 5,825 + -0.8 5,825 + -0.5 5,825 + -1.6 5,825 + -0.3 5,826 - -0.6 5,826 - +0.1 5,826 - +0.2 5,826 - -0.2 5,826 - +1.2 5,826 - +0.0 5,826 - +0.3 5,870 + +0.9 5,870 + -0.1 5,871 - -0.5 5,927 + +0.2 5,927 + -0.7 5,927 + -0.9 5,927 + +0.1 5,927 + -0.1 5,927 + +0.7 5,927 + +0.3 5,927 + +0.3 5,928 - +0.2 5,928 - -0.6 5,928 - +0.1 6,022 + +1.0 6,023 - -1.7 6,023 - -0.3 6,091 - -0.6 6,091 - -0.4 6,192 + -0.5 6,193 - -0.9 6,193 - -0.3 6,207 + -0.6 6,208 - -0.3 6,281 - -0.2 6,336 + +1.3 6,336 + -0.5 6,336 + -0.5 6,336 + -0.5 6,336 + -1.0 6,336 + +0.5 6,336 + -0.3 6,336 + -1.7 6,337 - -0.8 6,337 - -0.8 6,337 - +0.1 6,401 - -0.6 6,401 - +0.4 6,413 - +0.1 6,430 + -0.5 6,435 + -1.1 6,435 + -0.9 6,435 + -0.9 6,436 - -1.9 6,436 - -0.2 6,469 + -0.5 6,469 + +1.0 6,469 + -0.2 6,746 + GFF3190 0.22 -0.7 6,747 - GFF3190 0.22 -0.7 6,747 - GFF3190 0.22 -0.5 7,037 + GFF3190 0.44 -0.2 7,037 + GFF3190 0.44 -0.9 7,038 - GFF3190 0.44 -0.0 7,038 - GFF3190 0.44 -1.0 7,038 - GFF3190 0.44 -0.3 7,038 - GFF3190 0.44 +0.1 7,075 + GFF3190 0.47 -2.5 7,075 + GFF3190 0.47 -0.3 7,075 + GFF3190 0.47 -0.9 7,075 + GFF3190 0.47 -0.3 7,075 + GFF3190 0.47 -0.6 7,075 + GFF3190 0.47 +0.7 7,075 + GFF3190 0.47 -0.3 7,075 + GFF3190 0.47 -0.8 7,075 + GFF3190 0.47 +0.2 7,075 + GFF3190 0.47 +0.0 7,076 - GFF3190 0.47 -2.3 7,076 - GFF3190 0.47 +0.7 7,076 - GFF3190 0.47 +1.0 7,076 - GFF3190 0.47 -0.2 7,076 - GFF3190 0.47 +0.5 7,076 - GFF3190 0.47 -0.5 7,076 - GFF3190 0.47 -0.3 7,076 - GFF3190 0.47 +0.4 7,076 - GFF3190 0.47 -1.4 7,076 - GFF3190 0.47 -1.3 7,104 + GFF3190 0.49 -0.9 7,104 + GFF3190 0.49 +0.3 7,104 + GFF3190 0.49 -0.5 7,105 - GFF3190 0.49 -0.9 7,105 - GFF3190 0.49 +0.3 7,318 + GFF3190 0.65 -1.3 7,327 - GFF3190 0.65 -1.9 7,327 - GFF3190 0.65 +0.0 7,330 + GFF3190 0.66 +0.2 7,330 + GFF3190 0.66 -0.0 7,330 + GFF3190 0.66 -0.3 7,330 + GFF3190 0.66 +0.9 7,331 - GFF3190 0.66 -0.2 7,331 - GFF3190 0.66 -0.8 7,357 + GFF3190 0.68 -0.1 7,358 - GFF3190 0.68 -0.0 7,358 - GFF3190 0.68 +0.3 7,525 - GFF3190 0.80 +0.3 7,540 + GFF3190 0.81 +0.2 7,540 + GFF3190 0.81 -0.7 7,541 - GFF3190 0.81 +0.2 7,541 - GFF3190 0.81 -0.7 7,563 + GFF3190 0.83 -0.5 7,563 + GFF3190 0.83 +0.3 7,563 + GFF3190 0.83 +2.2 7,564 - GFF3190 0.83 +0.9 7,630 + GFF3190 0.88 +0.1 7,630 + GFF3190 0.88 -1.2 7,631 - GFF3190 0.88 -0.9 7,708 + -0.1 7,709 - -0.0 7,927 + -0.5 7,927 + -0.1 7,928 - -0.0 7,928 - -0.7 7,943 + -0.4 7,943 + +0.1 7,944 - +0.4 7,944 - -0.6 7,944 - -0.9 8,111 + GFF3191 0.25 -0.2 8,112 - GFF3191 0.25 +0.3 8,144 + GFF3191 0.29 +0.5 8,144 + GFF3191 0.29 -0.6 8,251 - GFF3191 0.44 -0.8 8,251 - GFF3191 0.44 +0.2 8,251 - GFF3191 0.44 -0.7 8,251 - GFF3191 0.44 +1.5 8,339 + GFF3191 0.56 -0.1 8,367 + GFF3191 0.60 -1.0 8,367 + GFF3191 0.60 -0.3 8,368 - GFF3191 0.60 -0.3 8,368 - GFF3191 0.60 +0.9 8,368 - GFF3191 0.60 -1.0 8,408 + GFF3191 0.66 -0.2 8,469 + GFF3191 0.74 +0.7 8,469 + GFF3191 0.74 -0.0 8,470 - GFF3191 0.74 +1.9 8,470 - GFF3191 0.74 +0.1 8,471 + GFF3191 0.74 +0.3 8,471 + GFF3191 0.74 +0.2 8,471 + GFF3191 0.74 +0.0 8,471 + GFF3191 0.74 -0.8 8,471 + GFF3191 0.74 +0.4 8,472 - GFF3191 0.74 +1.1 8,472 - GFF3191 0.74 +0.0 8,472 - GFF3191 0.74 -1.9 8,676 - -1.5 8,676 - +0.5 8,685 + +0.3 8,685 + -1.0 8,686 - -0.3 8,686 - -0.2 8,763 + -0.2 8,764 - +0.2 8,771 + +0.6 8,772 - +0.0
Or see this region's nucleotide sequence