Strain Fitness in Variovorax sp. SCN45 around GFF3175

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3174 and GFF3175 are separated by 59 nucleotidesGFF3175 and GFF3176 are separated by 18 nucleotidesGFF3176 and GFF3177 are separated by 162 nucleotides GFF3174 - Oxidoreductase, GMC family, at 614,266 to 615,906 GFF3174 GFF3175 - Uncharacterized MFS-type transporter, at 615,966 to 617,279 GFF3175 GFF3176 - Two-component transcriptional response regulator, LuxR family, at 617,298 to 617,771 GFF3176 GFF3177 - hypothetical protein, at 617,934 to 618,158 GFF3177 Position (kb) 615 616 617 618Strain fitness (log2 ratio) -2 -1 0 1at 614.971 kb on + strand, within GFF3174at 614.971 kb on + strand, within GFF3174at 614.972 kb on - strand, within GFF3174at 615.162 kb on - strand, within GFF3174at 615.162 kb on - strand, within GFF3174at 615.412 kb on - strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.517 kb on + strand, within GFF3174at 615.518 kb on - strand, within GFF3174at 615.518 kb on - strand, within GFF3174at 615.605 kb on - strand, within GFF3174at 616.038 kb on + strandat 616.038 kb on + strandat 616.039 kb on - strandat 616.039 kb on - strandat 616.039 kb on - strandat 616.089 kb on + strandat 616.089 kb on + strandat 616.090 kb on - strandat 616.131 kb on + strand, within GFF3175at 616.131 kb on + strand, within GFF3175at 616.383 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.416 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.572 kb on + strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.573 kb on - strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.752 kb on + strand, within GFF3175at 616.753 kb on - strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.881 kb on + strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 616.882 kb on - strand, within GFF3175at 617.001 kb on + strand, within GFF3175at 617.001 kb on + strand, within GFF3175at 617.002 kb on - strand, within GFF3175at 617.002 kb on - strand, within GFF3175at 617.086 kb on - strand, within GFF3175at 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.181 kb on + strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.182 kb on - strandat 617.285 kb on + strandat 617.285 kb on + strandat 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.368 kb on + strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.369 kb on - strand, within GFF3176at 617.406 kb on + strand, within GFF3176at 617.406 kb on + strand, within GFF3176at 617.587 kb on + strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.794 kb on + strandat 617.809 kb on - strandat 617.869 kb on + strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.947 kb on - strandat 618.113 kb on + strand, within GFF3177at 618.178 kb on + strandat 618.179 kb on - strandat 618.207 kb on + strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.261 kb on + strandat 618.262 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
614,971 + GFF3174 0.43 +0.4
614,971 + GFF3174 0.43 -0.6
614,972 - GFF3174 0.43 +0.1
615,162 - GFF3174 0.55 -0.3
615,162 - GFF3174 0.55 -0.4
615,412 - GFF3174 0.70 +0.0
615,517 + GFF3174 0.76 -0.3
615,517 + GFF3174 0.76 -0.4
615,517 + GFF3174 0.76 -0.4
615,518 - GFF3174 0.76 -0.2
615,518 - GFF3174 0.76 -0.6
615,605 - GFF3174 0.82 -0.2
616,038 + -0.9
616,038 + -0.2
616,039 - -0.5
616,039 - +1.3
616,039 - +0.2
616,089 + +0.0
616,089 + -0.7
616,090 - -0.1
616,131 + GFF3175 0.13 -0.7
616,131 + GFF3175 0.13 -1.0
616,383 + GFF3175 0.32 -1.7
616,416 + GFF3175 0.34 +1.6
616,416 + GFF3175 0.34 +0.2
616,416 + GFF3175 0.34 -0.0
616,416 + GFF3175 0.34 +0.6
616,416 + GFF3175 0.34 -0.4
616,572 + GFF3175 0.46 -0.7
616,572 + GFF3175 0.46 -0.4
616,572 + GFF3175 0.46 -0.7
616,572 + GFF3175 0.46 +0.2
616,572 + GFF3175 0.46 -0.4
616,572 + GFF3175 0.46 -0.2
616,572 + GFF3175 0.46 -0.4
616,572 + GFF3175 0.46 -2.4
616,573 - GFF3175 0.46 +1.2
616,573 - GFF3175 0.46 -0.8
616,573 - GFF3175 0.46 -1.5
616,573 - GFF3175 0.46 -0.6
616,573 - GFF3175 0.46 -0.0
616,752 + GFF3175 0.60 -0.3
616,752 + GFF3175 0.60 -1.8
616,753 - GFF3175 0.60 -0.1
616,881 + GFF3175 0.70 -0.9
616,881 + GFF3175 0.70 +0.1
616,881 + GFF3175 0.70 -0.7
616,881 + GFF3175 0.70 -0.5
616,881 + GFF3175 0.70 -0.2
616,881 + GFF3175 0.70 +0.0
616,881 + GFF3175 0.70 -0.5
616,881 + GFF3175 0.70 +0.3
616,882 - GFF3175 0.70 -0.7
616,882 - GFF3175 0.70 -1.0
616,882 - GFF3175 0.70 +0.5
616,882 - GFF3175 0.70 -0.7
616,882 - GFF3175 0.70 -0.6
616,882 - GFF3175 0.70 -0.5
616,882 - GFF3175 0.70 +1.6
617,001 + GFF3175 0.79 -0.0
617,001 + GFF3175 0.79 -1.0
617,002 - GFF3175 0.79 +0.3
617,002 - GFF3175 0.79 -0.3
617,086 - GFF3175 0.85 +0.2
617,181 + -1.8
617,181 + +0.6
617,181 + -0.7
617,181 + -0.3
617,181 + -0.6
617,181 + +0.3
617,181 + +0.0
617,181 + -0.6
617,181 + +0.1
617,182 - -1.0
617,182 - -0.4
617,182 - -0.5
617,182 - -0.5
617,182 - -0.7
617,285 + +0.0
617,285 + -0.8
617,368 + GFF3176 0.15 -0.1
617,368 + GFF3176 0.15 -0.5
617,368 + GFF3176 0.15 +0.3
617,368 + GFF3176 0.15 +0.4
617,368 + GFF3176 0.15 +0.0
617,368 + GFF3176 0.15 -1.0
617,369 - GFF3176 0.15 +0.4
617,369 - GFF3176 0.15 -0.3
617,369 - GFF3176 0.15 -1.0
617,369 - GFF3176 0.15 -0.8
617,369 - GFF3176 0.15 -0.4
617,369 - GFF3176 0.15 -0.9
617,406 + GFF3176 0.23 -0.1
617,406 + GFF3176 0.23 +0.0
617,587 + GFF3176 0.61 +0.6
617,588 - GFF3176 0.61 +0.1
617,588 - GFF3176 0.61 +0.6
617,794 + +1.0
617,809 - -0.3
617,869 + -0.3
617,870 - +0.0
617,870 - -0.6
617,870 - -0.5
617,870 - -0.1
617,946 + -0.6
617,946 + +0.0
617,946 + -0.6
617,947 - +0.2
618,113 + GFF3177 0.80 +0.0
618,178 + +1.2
618,179 - -0.8
618,207 + -0.6
618,208 - -0.4
618,208 - -0.4
618,208 - -0.2
618,261 + -0.4
618,262 - +1.6

Or see this region's nucleotide sequence