Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3160 and GFF3161 are separated by 4 nucleotides GFF3161 and GFF3162 are separated by 7 nucleotides
GFF3160 - Transcriptional regulator YeiE, LysR family, at 598,100 to 599,089
GFF3160
GFF3161 - Acetate kinase (EC 2.7.2.1), at 599,094 to 600,299
GFF3161
GFF3162 - Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15), at 600,307 to 602,130
GFF3162
Position (kb) 599
600
601 Strain fitness (log2 ratio) -2
-1
0
1 at 598.137 kb on + strand at 598.137 kb on + strand at 598.356 kb on + strand, within GFF3160 at 598.490 kb on + strand, within GFF3160 at 598.491 kb on - strand, within GFF3160 at 598.972 kb on - strand, within GFF3160 at 599.525 kb on - strand, within GFF3161 at 600.314 kb on + strand at 600.315 kb on - strand at 600.315 kb on - strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.323 kb on + strand at 600.566 kb on + strand, within GFF3162 at 600.699 kb on - strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.818 kb on + strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.819 kb on - strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.920 kb on + strand, within GFF3162 at 600.921 kb on - strand, within GFF3162
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 598,137 + +0.1 598,137 + -0.1 598,356 + GFF3160 0.26 -0.7 598,490 + GFF3160 0.39 -0.6 598,491 - GFF3160 0.39 -0.6 598,972 - GFF3160 0.88 -1.6 599,525 - GFF3161 0.36 -1.4 600,314 + +1.0 600,315 - -0.1 600,315 - +0.5 600,323 + -1.8 600,323 + -1.0 600,323 + -0.3 600,566 + GFF3162 0.14 -0.8 600,699 - GFF3162 0.21 +0.1 600,818 + GFF3162 0.28 -0.8 600,818 + GFF3162 0.28 +0.2 600,818 + GFF3162 0.28 -0.4 600,818 + GFF3162 0.28 -0.4 600,819 - GFF3162 0.28 +0.5 600,819 - GFF3162 0.28 -0.7 600,920 + GFF3162 0.34 -0.6 600,920 + GFF3162 0.34 -1.2 600,921 - GFF3162 0.34 +0.3
Or see this region's nucleotide sequence