Strain Fitness in Variovorax sp. SCN45 around GFF3094

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3092 and GFF3093 are separated by 48 nucleotidesGFF3093 and GFF3094 are separated by 55 nucleotidesGFF3094 and GFF3095 are separated by 113 nucleotidesGFF3095 and GFF3096 are separated by 13 nucleotides GFF3092 - Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17), at 522,483 to 523,778 GFF3092 GFF3093 - FIG138056: a glutathione-dependent thiol reductase, at 523,827 to 524,183 GFF3093 GFF3094 - 17 kDa surface antigen, at 524,239 to 524,817 GFF3094 GFF3095 - FIG074102: hypothetical protein, at 524,931 to 525,257 GFF3095 GFF3096 - Argininosuccinate synthase (EC 6.3.4.5), at 525,271 to 526,611 GFF3096 Position (kb) 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 523.837 kb on + strandat 523.838 kb on - strandat 523.838 kb on - strandat 523.838 kb on - strandat 523.838 kb on - strandat 523.838 kb on - strandat 523.840 kb on - strandat 523.840 kb on - strandat 523.905 kb on + strand, within GFF3093at 523.905 kb on + strand, within GFF3093at 523.905 kb on + strand, within GFF3093at 523.905 kb on + strand, within GFF3093at 523.905 kb on + strand, within GFF3093at 523.905 kb on + strand, within GFF3093at 523.906 kb on - strand, within GFF3093at 523.906 kb on - strand, within GFF3093at 523.906 kb on - strand, within GFF3093at 524.181 kb on + strandat 524.181 kb on + strandat 524.181 kb on + strandat 524.181 kb on + strandat 524.182 kb on - strandat 524.182 kb on - strandat 524.182 kb on - strandat 524.182 kb on - strandat 524.238 kb on + strandat 524.238 kb on + strandat 524.238 kb on + strandat 524.238 kb on + strandat 524.238 kb on + strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.239 kb on - strandat 524.389 kb on - strand, within GFF3094at 524.401 kb on + strand, within GFF3094at 524.401 kb on + strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.402 kb on - strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.409 kb on + strand, within GFF3094at 524.410 kb on - strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.413 kb on + strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.414 kb on - strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.419 kb on + strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.420 kb on - strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.434 kb on + strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.435 kb on - strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.632 kb on + strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.633 kb on - strand, within GFF3094at 524.653 kb on + strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.654 kb on - strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.674 kb on + strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.675 kb on - strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.689 kb on + strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.690 kb on - strand, within GFF3094at 524.695 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.707 kb on + strand, within GFF3094at 524.708 kb on - strand, within GFF3094at 524.708 kb on - strand, within GFF3094at 524.714 kb on - strand, within GFF3094at 524.746 kb on + strand, within GFF3094at 524.746 kb on + strand, within GFF3094at 524.773 kb on + strandat 524.774 kb on - strandat 524.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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523,837 + +1.0
523,838 - -0.4
523,838 - -0.0
523,838 - +0.4
523,838 - -0.6
523,838 - -0.1
523,840 - -0.5
523,840 - +0.0
523,905 + GFF3093 0.22 -0.2
523,905 + GFF3093 0.22 +0.1
523,905 + GFF3093 0.22 -2.1
523,905 + GFF3093 0.22 -0.5
523,905 + GFF3093 0.22 +0.1
523,905 + GFF3093 0.22 +0.9
523,906 - GFF3093 0.22 -0.7
523,906 - GFF3093 0.22 -0.2
523,906 - GFF3093 0.22 -0.8
524,181 + +0.5
524,181 + -1.4
524,181 + -0.6
524,181 + +0.1
524,182 - -0.3
524,182 - +0.4
524,182 - -0.3
524,182 - -0.4
524,238 + +0.0
524,238 + -1.3
524,238 + -0.6
524,238 + +0.2
524,238 + +0.6
524,239 - +0.0
524,239 - -1.2
524,239 - -1.5
524,239 - +0.4
524,239 - -1.0
524,239 - -1.1
524,239 - -1.2
524,389 - GFF3094 0.26 +0.1
524,401 + GFF3094 0.28 -0.2
524,401 + GFF3094 0.28 -0.6
524,402 - GFF3094 0.28 -0.5
524,402 - GFF3094 0.28 -0.4
524,402 - GFF3094 0.28 +0.5
524,402 - GFF3094 0.28 -0.0
524,402 - GFF3094 0.28 -0.3
524,409 + GFF3094 0.29 -0.1
524,409 + GFF3094 0.29 -0.7
524,409 + GFF3094 0.29 -0.5
524,409 + GFF3094 0.29 -0.3
524,409 + GFF3094 0.29 -0.2
524,410 - GFF3094 0.30 -0.6
524,413 + GFF3094 0.30 +0.1
524,413 + GFF3094 0.30 -0.5
524,413 + GFF3094 0.30 -0.6
524,413 + GFF3094 0.30 -2.3
524,414 - GFF3094 0.30 +0.3
524,414 - GFF3094 0.30 -0.6
524,414 - GFF3094 0.30 +0.3
524,419 + GFF3094 0.31 -0.2
524,419 + GFF3094 0.31 -1.2
524,419 + GFF3094 0.31 -1.7
524,419 + GFF3094 0.31 +0.2
524,419 + GFF3094 0.31 -0.1
524,419 + GFF3094 0.31 -0.1
524,420 - GFF3094 0.31 -1.3
524,420 - GFF3094 0.31 -0.0
524,420 - GFF3094 0.31 +1.3
524,420 - GFF3094 0.31 +1.6
524,420 - GFF3094 0.31 -1.0
524,434 + GFF3094 0.34 -0.6
524,434 + GFF3094 0.34 -0.3
524,434 + GFF3094 0.34 -0.4
524,434 + GFF3094 0.34 +0.4
524,434 + GFF3094 0.34 +0.6
524,434 + GFF3094 0.34 -2.5
524,434 + GFF3094 0.34 -1.3
524,434 + GFF3094 0.34 +0.2
524,434 + GFF3094 0.34 +0.1
524,435 - GFF3094 0.34 -0.4
524,435 - GFF3094 0.34 -1.4
524,435 - GFF3094 0.34 -0.0
524,435 - GFF3094 0.34 -1.0
524,435 - GFF3094 0.34 +0.8
524,435 - GFF3094 0.34 -1.8
524,435 - GFF3094 0.34 -0.6
524,435 - GFF3094 0.34 -0.7
524,632 + GFF3094 0.68 +0.4
524,632 + GFF3094 0.68 -0.5
524,632 + GFF3094 0.68 +0.6
524,632 + GFF3094 0.68 -0.7
524,632 + GFF3094 0.68 -0.5
524,632 + GFF3094 0.68 -0.2
524,632 + GFF3094 0.68 +0.1
524,632 + GFF3094 0.68 -0.8
524,633 - GFF3094 0.68 -0.7
524,633 - GFF3094 0.68 -0.6
524,633 - GFF3094 0.68 -1.1
524,633 - GFF3094 0.68 -0.3
524,633 - GFF3094 0.68 +0.5
524,633 - GFF3094 0.68 +0.2
524,633 - GFF3094 0.68 -0.8
524,633 - GFF3094 0.68 -0.6
524,633 - GFF3094 0.68 +0.4
524,633 - GFF3094 0.68 +1.2
524,653 + GFF3094 0.72 +0.0
524,654 - GFF3094 0.72 +0.5
524,654 - GFF3094 0.72 -1.5
524,654 - GFF3094 0.72 +1.4
524,654 - GFF3094 0.72 -1.4
524,654 - GFF3094 0.72 -0.4
524,654 - GFF3094 0.72 -0.6
524,654 - GFF3094 0.72 +0.2
524,674 + GFF3094 0.75 -1.1
524,674 + GFF3094 0.75 -0.2
524,674 + GFF3094 0.75 +1.2
524,674 + GFF3094 0.75 -0.8
524,675 - GFF3094 0.75 +0.3
524,675 - GFF3094 0.75 +0.0
524,675 - GFF3094 0.75 -0.6
524,689 + GFF3094 0.78 +0.0
524,689 + GFF3094 0.78 +0.0
524,689 + GFF3094 0.78 +0.2
524,689 + GFF3094 0.78 -0.5
524,689 + GFF3094 0.78 +0.5
524,689 + GFF3094 0.78 +2.0
524,689 + GFF3094 0.78 -0.7
524,689 + GFF3094 0.78 +0.0
524,690 - GFF3094 0.78 -1.3
524,690 - GFF3094 0.78 -1.8
524,690 - GFF3094 0.78 -0.3
524,690 - GFF3094 0.78 -1.2
524,690 - GFF3094 0.78 +0.1
524,690 - GFF3094 0.78 +0.3
524,690 - GFF3094 0.78 -0.2
524,690 - GFF3094 0.78 -0.7
524,690 - GFF3094 0.78 -0.1
524,695 + GFF3094 0.79 -1.5
524,707 + GFF3094 0.81 +0.2
524,707 + GFF3094 0.81 -0.8
524,707 + GFF3094 0.81 -0.3
524,707 + GFF3094 0.81 -1.0
524,707 + GFF3094 0.81 -1.5
524,707 + GFF3094 0.81 +0.9
524,708 - GFF3094 0.81 -0.8
524,708 - GFF3094 0.81 +0.6
524,714 - GFF3094 0.82 -0.8
524,746 + GFF3094 0.88 +0.6
524,746 + GFF3094 0.88 +0.3
524,773 + +1.2
524,774 - -0.4
524,774 - +0.0

Or see this region's nucleotide sequence