Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3045 and GFF3046 are separated by 64 nucleotides GFF3046 and GFF3047 overlap by 4 nucleotides GFF3047 and GFF3048 are separated by 21 nucleotides GFF3048 and GFF3049 are separated by 40 nucleotides
GFF3045 - Glutamine ABC transporter, substrate-binding protein GlnH, at 480,919 to 481,761
GFF3045
GFF3046 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 481,826 to 482,617
GFF3046
GFF3047 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 482,614 to 483,393
GFF3047
GFF3048 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 483,415 to 484,116
GFF3048
GFF3049 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 484,157 to 484,909
GFF3049
Position (kb) 482
483
484 Strain fitness (log2 ratio) -1
0
1 at 482.771 kb on + strand, within GFF3047 at 482.772 kb on - strand, within GFF3047 at 482.775 kb on - strand, within GFF3047 at 482.874 kb on - strand, within GFF3047 at 483.071 kb on + strand, within GFF3047 at 483.072 kb on - strand, within GFF3047 at 483.144 kb on - strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.188 kb on + strand, within GFF3047 at 483.390 kb on - strand at 483.491 kb on + strand, within GFF3048 at 483.492 kb on - strand, within GFF3048 at 483.924 kb on - strand, within GFF3048
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 482,771 + GFF3047 0.20 +0.2 482,772 - GFF3047 0.20 +0.3 482,775 - GFF3047 0.21 +0.8 482,874 - GFF3047 0.33 +0.4 483,071 + GFF3047 0.59 +0.2 483,072 - GFF3047 0.59 -1.2 483,144 - GFF3047 0.68 +0.9 483,188 + GFF3047 0.74 +0.5 483,188 + GFF3047 0.74 -0.2 483,188 + GFF3047 0.74 +0.7 483,188 + GFF3047 0.74 +0.4 483,188 + GFF3047 0.74 +0.0 483,390 - -1.7 483,491 + GFF3048 0.11 +0.6 483,492 - GFF3048 0.11 +0.0 483,924 - GFF3048 0.73 -0.1
Or see this region's nucleotide sequence