Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3027 and GFF3028 are separated by 5 nucleotides GFF3028 and GFF3029 are separated by 58 nucleotides GFF3029 and GFF3030 overlap by 1 nucleotides
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
GFF3028 - T6SS outer membrane component TssL (ImpK/VasF), at 456,521 to 457,282
GFF3028
GFF3029 - T6SS component TssM (IcmF/VasK), at 457,341 to 461,426
GFF3029
GFF3030 - Uncharacterized protein ImpA, at 461,426 to 462,625
GFF3030
Position (kb) 457
458
459
460
461
462 Strain fitness (log2 ratio) -2
-1
0
1 at 456.394 kb on - strand at 456.584 kb on + strand at 456.755 kb on + strand, within GFF3028 at 456.755 kb on + strand, within GFF3028 at 456.756 kb on - strand, within GFF3028 at 456.941 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.094 kb on + strand, within GFF3028 at 457.419 kb on + strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.420 kb on - strand at 457.732 kb on - strand at 457.804 kb on - strand, within GFF3029 at 457.966 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.068 kb on - strand, within GFF3029 at 458.085 kb on + strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.086 kb on - strand, within GFF3029 at 458.244 kb on + strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.245 kb on - strand, within GFF3029 at 458.275 kb on - strand, within GFF3029 at 458.304 kb on + strand, within GFF3029 at 458.695 kb on + strand, within GFF3029 at 458.695 kb on + strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 458.770 kb on - strand, within GFF3029 at 459.055 kb on - strand, within GFF3029 at 459.156 kb on + strand, within GFF3029 at 459.204 kb on + strand, within GFF3029 at 459.510 kb on + strand, within GFF3029 at 459.511 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 459.856 kb on - strand, within GFF3029 at 460.035 kb on + strand, within GFF3029 at 460.035 kb on + strand, within GFF3029 at 460.188 kb on + strand, within GFF3029 at 460.285 kb on - strand, within GFF3029 at 460.285 kb on - strand, within GFF3029 at 460.339 kb on - strand, within GFF3029 at 460.339 kb on - strand, within GFF3029 at 460.578 kb on + strand, within GFF3029 at 460.578 kb on + strand, within GFF3029 at 460.579 kb on - strand, within GFF3029 at 460.579 kb on - strand, within GFF3029 at 460.602 kb on + strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.603 kb on - strand, within GFF3029 at 460.615 kb on - strand, within GFF3029 at 461.053 kb on - strand at 461.564 kb on + strand, within GFF3030 at 462.314 kb on + strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.315 kb on - strand, within GFF3030 at 462.318 kb on + strand, within GFF3030 at 462.318 kb on + strand, within GFF3030 at 462.319 kb on - strand, within GFF3030 at 462.319 kb on - strand, within GFF3030
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 456,394 - +0.5 456,584 + -0.4 456,755 + GFF3028 0.31 -0.1 456,755 + GFF3028 0.31 -0.8 456,756 - GFF3028 0.31 -0.7 456,941 + GFF3028 0.55 -0.2 457,094 + GFF3028 0.75 -0.2 457,094 + GFF3028 0.75 -0.2 457,419 + +0.5 457,420 - +0.4 457,420 - -0.6 457,420 - -0.6 457,732 - +0.3 457,804 - GFF3029 0.11 -0.0 457,966 - GFF3029 0.15 -1.1 458,068 - GFF3029 0.18 +0.8 458,068 - GFF3029 0.18 +0.2 458,085 + GFF3029 0.18 -2.5 458,086 - GFF3029 0.18 +1.6 458,086 - GFF3029 0.18 +0.2 458,086 - GFF3029 0.18 -0.2 458,086 - GFF3029 0.18 +1.4 458,244 + GFF3029 0.22 +0.0 458,245 - GFF3029 0.22 +0.0 458,245 - GFF3029 0.22 -0.4 458,275 - GFF3029 0.23 +0.6 458,304 + GFF3029 0.24 +1.1 458,695 + GFF3029 0.33 -0.3 458,695 + GFF3029 0.33 -0.7 458,770 - GFF3029 0.35 +0.1 458,770 - GFF3029 0.35 -0.1 458,770 - GFF3029 0.35 +0.9 458,770 - GFF3029 0.35 -0.6 459,055 - GFF3029 0.42 +0.3 459,156 + GFF3029 0.44 +0.5 459,204 + GFF3029 0.46 -0.9 459,510 + GFF3029 0.53 -1.4 459,511 - GFF3029 0.53 -0.4 459,856 - GFF3029 0.62 +1.1 459,856 - GFF3029 0.62 -0.5 459,856 - GFF3029 0.62 -0.4 459,856 - GFF3029 0.62 +1.0 460,035 + GFF3029 0.66 -0.6 460,035 + GFF3029 0.66 -0.2 460,188 + GFF3029 0.70 +0.2 460,285 - GFF3029 0.72 +1.2 460,285 - GFF3029 0.72 +0.8 460,339 - GFF3029 0.73 -1.5 460,339 - GFF3029 0.73 -0.5 460,578 + GFF3029 0.79 -0.4 460,578 + GFF3029 0.79 -0.4 460,579 - GFF3029 0.79 +0.0 460,579 - GFF3029 0.79 +0.3 460,602 + GFF3029 0.80 -0.1 460,603 - GFF3029 0.80 -0.7 460,603 - GFF3029 0.80 -0.4 460,603 - GFF3029 0.80 -0.1 460,615 - GFF3029 0.80 +0.0 461,053 - -0.2 461,564 + GFF3030 0.12 +0.1 462,314 + GFF3030 0.74 +0.5 462,315 - GFF3030 0.74 -0.5 462,315 - GFF3030 0.74 +0.2 462,315 - GFF3030 0.74 -1.5 462,315 - GFF3030 0.74 +0.2 462,318 + GFF3030 0.74 -0.6 462,318 + GFF3030 0.74 -0.2 462,319 - GFF3030 0.74 +0.8 462,319 - GFF3030 0.74 -0.1
Or see this region's nucleotide sequence