Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3025 and GFF3026 overlap by 4 nucleotides GFF3026 and GFF3027 are separated by 20 nucleotides
GFF3025 - Proton/sodium-glutamate symport protein, at 453,233 to 454,702
GFF3025
GFF3026 - KEGG: type VI secretion system protein, at 454,699 to 455,172
GFF3026
GFF3027 - T6SS component TssK (ImpJ/VasE), at 455,193 to 456,515
GFF3027
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.815 kb on + strand, within GFF3025 at 453.815 kb on + strand, within GFF3025 at 453.816 kb on - strand, within GFF3025 at 453.816 kb on - strand, within GFF3025 at 454.196 kb on + strand, within GFF3025 at 454.196 kb on + strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.197 kb on - strand, within GFF3025 at 454.199 kb on + strand, within GFF3025 at 454.200 kb on - strand, within GFF3025 at 454.232 kb on + strand, within GFF3025 at 454.233 kb on - strand, within GFF3025 at 454.662 kb on - strand at 454.976 kb on - strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.071 kb on + strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.072 kb on - strand, within GFF3026 at 455.518 kb on - strand, within GFF3027 at 455.518 kb on - strand, within GFF3027 at 455.988 kb on + strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 455.989 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.064 kb on - strand, within GFF3027 at 456.088 kb on + strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.089 kb on - strand, within GFF3027 at 456.144 kb on + strand, within GFF3027
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 453,815 + GFF3025 0.40 +0.6 453,815 + GFF3025 0.40 -1.0 453,816 - GFF3025 0.40 -0.5 453,816 - GFF3025 0.40 -1.8 454,196 + GFF3025 0.66 -1.0 454,196 + GFF3025 0.66 -0.1 454,197 - GFF3025 0.66 +0.0 454,197 - GFF3025 0.66 +1.6 454,199 + GFF3025 0.66 +0.0 454,200 - GFF3025 0.66 +0.3 454,232 + GFF3025 0.68 -0.1 454,233 - GFF3025 0.68 -0.4 454,662 - +0.0 454,976 - GFF3026 0.58 -0.6 455,071 + GFF3026 0.78 -1.0 455,071 + GFF3026 0.78 -0.2 455,071 + GFF3026 0.78 -0.8 455,072 - GFF3026 0.79 -1.3 455,072 - GFF3026 0.79 +0.2 455,518 - GFF3027 0.25 -1.4 455,518 - GFF3027 0.25 -1.0 455,988 + GFF3027 0.60 -1.0 455,989 - GFF3027 0.60 -0.1 455,989 - GFF3027 0.60 +0.4 455,989 - GFF3027 0.60 -0.5 456,064 - GFF3027 0.66 -0.2 456,064 - GFF3027 0.66 +0.4 456,088 + GFF3027 0.68 -0.5 456,089 - GFF3027 0.68 -0.6 456,089 - GFF3027 0.68 +1.0 456,144 + GFF3027 0.72 +1.0
Or see this region's nucleotide sequence