Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF300 and GFF301 overlap by 4 nucleotides GFF301 and GFF302 overlap by 1 nucleotides GFF302 and GFF303 are separated by 48 nucleotides GFF303 and GFF304 are separated by 117 nucleotides
GFF300 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 333,647 to 334,279
GFF300
GFF301 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 334,276 to 335,193
GFF301
GFF302 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 335,193 to 336,494
GFF302
GFF303 - Probable transcriptional regulatory protein YebC, at 336,543 to 337,268
GFF303
GFF304 - Ubiquinone/menaquinone biosynthesis methyltransferase family protein, at 337,386 to 338,174
GFF304
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1 at 335.291 kb on - strand at 335.291 kb on - strand at 335.291 kb on - strand at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.677 kb on + strand, within GFF302 at 335.791 kb on + strand, within GFF302 at 336.100 kb on + strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.101 kb on - strand, within GFF302 at 336.409 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.480 kb on + strand at 336.481 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.487 kb on - strand at 336.544 kb on + strand at 336.568 kb on + strand at 336.569 kb on - strand at 336.910 kb on + strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 336.911 kb on - strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.024 kb on + strand, within GFF303 at 337.025 kb on - strand, within GFF303 at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.241 kb on + strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.242 kb on - strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.256 kb on + strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.257 kb on - strand at 337.276 kb on + strand at 337.276 kb on + strand at 337.277 kb on - strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.315 kb on + strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.316 kb on - strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.376 kb on + strand at 337.377 kb on - strand at 337.380 kb on - strand at 337.455 kb on + strand at 337.455 kb on + strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.456 kb on - strand at 337.458 kb on + strand at 337.458 kb on + strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand at 337.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 335,291 - -1.3 335,291 - -0.3 335,291 - -1.5 335,677 + GFF302 0.37 +1.3 335,677 + GFF302 0.37 -0.7 335,677 + GFF302 0.37 -2.2 335,791 + GFF302 0.46 -0.3 336,100 + GFF302 0.70 -1.0 336,101 - GFF302 0.70 +1.3 336,101 - GFF302 0.70 -0.5 336,101 - GFF302 0.70 +0.3 336,409 + -1.0 336,480 + -2.3 336,480 + +0.3 336,480 + -0.3 336,481 - +1.3 336,487 - -0.0 336,487 - +0.3 336,487 - +0.3 336,544 + +0.1 336,568 + +0.3 336,569 - -1.2 336,910 + GFF303 0.51 -1.4 336,911 - GFF303 0.51 -0.3 336,911 - GFF303 0.51 -0.7 336,911 - GFF303 0.51 +0.7 337,024 + GFF303 0.66 -1.8 337,024 + GFF303 0.66 +0.2 337,024 + GFF303 0.66 -1.1 337,025 - GFF303 0.66 -0.8 337,241 + -1.4 337,241 + -0.9 337,241 + -0.5 337,241 + -0.6 337,242 - -0.5 337,242 - -1.1 337,242 - +0.3 337,256 + -0.3 337,256 + -1.5 337,256 + -0.5 337,256 + -0.7 337,257 - -0.7 337,257 - -1.4 337,257 - +0.1 337,257 - +0.4 337,257 - -0.0 337,276 + -0.3 337,276 + +0.0 337,277 - -0.1 337,315 + -0.3 337,315 + +0.1 337,315 + +0.6 337,315 + -0.3 337,316 - -0.3 337,316 - -0.3 337,316 - -0.6 337,376 + -0.5 337,376 + -0.5 337,376 + -0.5 337,376 + -0.2 337,376 + -1.4 337,376 + +1.3 337,377 - -1.1 337,380 - -0.0 337,455 + -0.1 337,455 + -0.7 337,456 - -0.3 337,456 - -0.8 337,456 - -1.1 337,456 - -0.7 337,458 + -0.3 337,458 + -1.0 337,459 - -1.3 337,459 - -0.4 337,459 - -0.1 337,459 - +0.5 337,459 - +0.1 337,459 - +0.7 337,459 - -0.2
Or see this region's nucleotide sequence