Strain Fitness in Variovorax sp. SCN45 around GFF3018

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3017 and GFF3018 are separated by 5 nucleotidesGFF3018 and GFF3019 are separated by 53 nucleotidesGFF3019 and GFF3020 are separated by 3 nucleotides GFF3017 - T6SS AAA+ chaperone ClpV (TssH), at 444,096 to 446,837 GFF3017 GFF3018 - VgrG protein, at 446,843 to 448,783 GFF3018 GFF3019 - hypothetical protein, at 448,837 to 449,511 GFF3019 GFF3020 - FIG00966904: hypothetical protein, at 449,515 to 449,904 GFF3020 Position (kb) 446 447 448 449Strain fitness (log2 ratio) -2 -1 0 1at 446.095 kb on - strand, within GFF3017at 446.239 kb on - strand, within GFF3017at 447.092 kb on + strand, within GFF3018at 447.092 kb on + strand, within GFF3018at 447.092 kb on + strand, within GFF3018at 447.093 kb on - strand, within GFF3018at 447.093 kb on - strand, within GFF3018at 447.122 kb on + strand, within GFF3018at 447.122 kb on + strand, within GFF3018at 447.122 kb on + strand, within GFF3018at 447.182 kb on + strand, within GFF3018at 447.183 kb on - strand, within GFF3018at 447.183 kb on - strand, within GFF3018at 447.266 kb on + strand, within GFF3018at 447.266 kb on + strand, within GFF3018at 447.266 kb on + strand, within GFF3018at 447.266 kb on + strand, within GFF3018at 447.267 kb on - strand, within GFF3018at 447.267 kb on - strand, within GFF3018at 447.293 kb on + strand, within GFF3018at 447.351 kb on - strand, within GFF3018at 447.479 kb on + strand, within GFF3018at 447.539 kb on + strand, within GFF3018at 447.608 kb on + strand, within GFF3018at 447.782 kb on + strand, within GFF3018at 447.782 kb on + strand, within GFF3018at 447.782 kb on + strand, within GFF3018at 447.782 kb on + strand, within GFF3018at 447.782 kb on + strand, within GFF3018at 447.783 kb on - strand, within GFF3018at 447.824 kb on + strand, within GFF3018at 447.824 kb on + strand, within GFF3018at 447.824 kb on + strand, within GFF3018at 447.825 kb on - strand, within GFF3018at 447.825 kb on - strand, within GFF3018at 447.825 kb on - strand, within GFF3018at 447.825 kb on - strand, within GFF3018at 448.109 kb on + strand, within GFF3018at 448.109 kb on + strand, within GFF3018at 448.109 kb on + strand, within GFF3018at 448.109 kb on + strand, within GFF3018at 448.109 kb on + strand, within GFF3018at 448.110 kb on - strand, within GFF3018at 448.110 kb on - strand, within GFF3018at 448.110 kb on - strand, within GFF3018at 448.110 kb on - strand, within GFF3018at 448.154 kb on + strand, within GFF3018at 448.289 kb on + strand, within GFF3018at 448.289 kb on + strand, within GFF3018at 448.289 kb on + strand, within GFF3018at 448.289 kb on + strand, within GFF3018at 448.290 kb on - strand, within GFF3018at 448.290 kb on - strand, within GFF3018at 448.511 kb on + strand, within GFF3018at 448.511 kb on + strand, within GFF3018at 448.512 kb on - strand, within GFF3018at 448.960 kb on + strand, within GFF3019at 449.069 kb on - strand, within GFF3019at 449.072 kb on - strand, within GFF3019at 449.176 kb on + strand, within GFF3019at 449.176 kb on + strand, within GFF3019at 449.209 kb on + strand, within GFF3019at 449.210 kb on - strand, within GFF3019at 449.210 kb on - strand, within GFF3019at 449.210 kb on - strand, within GFF3019at 449.210 kb on - strand, within GFF3019at 449.210 kb on - strand, within GFF3019at 449.282 kb on - strand, within GFF3019at 449.317 kb on + strand, within GFF3019at 449.317 kb on + strand, within GFF3019at 449.317 kb on + strand, within GFF3019at 449.318 kb on - strand, within GFF3019

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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446,095 - GFF3017 0.73 -0.2
446,239 - GFF3017 0.78 -1.5
447,092 + GFF3018 0.13 +0.5
447,092 + GFF3018 0.13 -0.4
447,092 + GFF3018 0.13 -0.4
447,093 - GFF3018 0.13 +0.3
447,093 - GFF3018 0.13 -0.4
447,122 + GFF3018 0.14 +1.2
447,122 + GFF3018 0.14 -0.8
447,122 + GFF3018 0.14 -0.4
447,182 + GFF3018 0.17 -2.0
447,183 - GFF3018 0.18 -1.5
447,183 - GFF3018 0.18 +0.5
447,266 + GFF3018 0.22 +0.0
447,266 + GFF3018 0.22 -0.4
447,266 + GFF3018 0.22 -1.1
447,266 + GFF3018 0.22 +1.0
447,267 - GFF3018 0.22 +0.0
447,267 - GFF3018 0.22 -2.0
447,293 + GFF3018 0.23 -0.2
447,351 - GFF3018 0.26 -0.8
447,479 + GFF3018 0.33 -0.8
447,539 + GFF3018 0.36 +0.2
447,608 + GFF3018 0.39 -0.4
447,782 + GFF3018 0.48 +0.0
447,782 + GFF3018 0.48 -1.5
447,782 + GFF3018 0.48 +1.6
447,782 + GFF3018 0.48 -0.7
447,782 + GFF3018 0.48 -0.6
447,783 - GFF3018 0.48 -0.3
447,824 + GFF3018 0.51 -1.0
447,824 + GFF3018 0.51 -0.4
447,824 + GFF3018 0.51 -1.0
447,825 - GFF3018 0.51 -0.2
447,825 - GFF3018 0.51 -0.0
447,825 - GFF3018 0.51 -0.2
447,825 - GFF3018 0.51 -0.5
448,109 + GFF3018 0.65 -0.5
448,109 + GFF3018 0.65 -0.5
448,109 + GFF3018 0.65 -0.4
448,109 + GFF3018 0.65 -1.5
448,109 + GFF3018 0.65 +0.6
448,110 - GFF3018 0.65 -2.2
448,110 - GFF3018 0.65 -0.4
448,110 - GFF3018 0.65 -1.9
448,110 - GFF3018 0.65 -0.6
448,154 + GFF3018 0.68 -0.1
448,289 + GFF3018 0.74 +1.3
448,289 + GFF3018 0.74 -0.5
448,289 + GFF3018 0.74 -1.0
448,289 + GFF3018 0.74 +1.5
448,290 - GFF3018 0.75 -0.2
448,290 - GFF3018 0.75 +0.0
448,511 + GFF3018 0.86 +0.6
448,511 + GFF3018 0.86 +0.0
448,512 - GFF3018 0.86 -0.7
448,960 + GFF3019 0.18 -0.7
449,069 - GFF3019 0.34 -2.0
449,072 - GFF3019 0.35 +0.2
449,176 + GFF3019 0.50 -0.3
449,176 + GFF3019 0.50 -0.6
449,209 + GFF3019 0.55 -0.9
449,210 - GFF3019 0.55 -0.4
449,210 - GFF3019 0.55 +0.2
449,210 - GFF3019 0.55 -0.1
449,210 - GFF3019 0.55 -0.3
449,210 - GFF3019 0.55 +0.6
449,282 - GFF3019 0.66 -0.4
449,317 + GFF3019 0.71 -1.2
449,317 + GFF3019 0.71 +0.3
449,317 + GFF3019 0.71 -0.2
449,318 - GFF3019 0.71 -0.1

Or see this region's nucleotide sequence