Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2958 and GFF2959 overlap by 4 nucleotides GFF2959 and GFF2960 are separated by 64 nucleotides GFF2960 and GFF2961 are separated by 103 nucleotides
GFF2958 - hypothetical protein, at 385,847 to 387,583
GFF2958
GFF2959 - Uncharacterized protein YfaP, at 387,580 to 388,395
GFF2959
GFF2960 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 388,460 to 389,023
GFF2960
GFF2961 - CzcABC family efflux RND transporter, transmembrane protein, at 389,127 to 392,348
GFF2961
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 386.721 kb on - strand, within GFF2958 at 386.861 kb on + strand, within GFF2958 at 386.909 kb on + strand, within GFF2958 at 386.909 kb on + strand, within GFF2958 at 386.909 kb on + strand, within GFF2958 at 386.909 kb on + strand, within GFF2958 at 386.910 kb on - strand, within GFF2958 at 386.910 kb on - strand, within GFF2958 at 386.910 kb on - strand, within GFF2958 at 386.910 kb on - strand, within GFF2958 at 386.910 kb on - strand, within GFF2958 at 386.990 kb on + strand, within GFF2958 at 386.990 kb on + strand, within GFF2958 at 386.990 kb on + strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 386.991 kb on - strand, within GFF2958 at 387.144 kb on - strand, within GFF2958 at 387.144 kb on - strand, within GFF2958 at 387.144 kb on - strand, within GFF2958 at 387.144 kb on - strand, within GFF2958 at 387.497 kb on + strand at 387.497 kb on + strand at 387.497 kb on + strand at 387.497 kb on + strand at 387.498 kb on - strand at 387.498 kb on - strand at 387.624 kb on + strand at 387.639 kb on + strand at 387.639 kb on + strand at 387.639 kb on + strand at 387.639 kb on + strand at 387.639 kb on + strand at 387.640 kb on - strand at 387.640 kb on - strand at 388.006 kb on + strand, within GFF2959 at 388.006 kb on + strand, within GFF2959 at 388.006 kb on + strand, within GFF2959 at 388.007 kb on - strand, within GFF2959 at 388.007 kb on - strand, within GFF2959 at 388.007 kb on - strand, within GFF2959 at 388.007 kb on - strand, within GFF2959 at 388.120 kb on + strand, within GFF2959 at 388.120 kb on + strand, within GFF2959 at 388.120 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.222 kb on + strand, within GFF2959 at 388.240 kb on + strand, within GFF2959 at 388.240 kb on + strand, within GFF2959 at 388.240 kb on + strand, within GFF2959 at 388.240 kb on + strand, within GFF2959 at 388.241 kb on - strand, within GFF2959 at 388.676 kb on + strand, within GFF2960 at 388.677 kb on - strand, within GFF2960 at 388.677 kb on - strand, within GFF2960 at 388.677 kb on - strand, within GFF2960 at 388.677 kb on - strand, within GFF2960 at 388.749 kb on - strand, within GFF2960 at 388.749 kb on - strand, within GFF2960 at 388.907 kb on + strand, within GFF2960 at 388.908 kb on - strand, within GFF2960 at 388.908 kb on - strand, within GFF2960 at 388.908 kb on - strand, within GFF2960 at 388.908 kb on - strand, within GFF2960 at 389.021 kb on + strand at 389.021 kb on + strand at 389.022 kb on - strand at 389.022 kb on - strand at 389.022 kb on - strand at 389.022 kb on - strand at 389.022 kb on - strand at 389.033 kb on - strand at 389.033 kb on - strand at 389.069 kb on + strand at 389.069 kb on + strand at 389.069 kb on + strand at 389.069 kb on + strand at 389.069 kb on + strand at 389.070 kb on - strand at 389.070 kb on - strand at 389.070 kb on - strand at 389.070 kb on - strand at 389.075 kb on + strand at 389.076 kb on - strand at 389.083 kb on + strand at 389.083 kb on + strand at 389.083 kb on + strand at 389.083 kb on + strand at 389.083 kb on + strand at 389.084 kb on - strand at 389.084 kb on - strand at 389.084 kb on - strand at 389.084 kb on - strand at 389.084 kb on - strand at 389.084 kb on - strand at 389.154 kb on + strand at 389.154 kb on + strand at 389.154 kb on + strand at 389.154 kb on + strand at 389.154 kb on + strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.155 kb on - strand at 389.271 kb on + strand at 389.271 kb on + strand at 389.271 kb on + strand at 389.271 kb on + strand at 389.272 kb on - strand at 389.272 kb on - strand at 389.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 386,721 - GFF2958 0.50 -0.4 386,861 + GFF2958 0.58 +0.4 386,909 + GFF2958 0.61 -0.8 386,909 + GFF2958 0.61 -0.1 386,909 + GFF2958 0.61 -1.0 386,909 + GFF2958 0.61 +0.2 386,910 - GFF2958 0.61 -0.8 386,910 - GFF2958 0.61 -0.5 386,910 - GFF2958 0.61 -0.6 386,910 - GFF2958 0.61 -0.1 386,910 - GFF2958 0.61 -0.6 386,990 + GFF2958 0.66 -0.1 386,990 + GFF2958 0.66 -0.3 386,990 + GFF2958 0.66 +0.1 386,991 - GFF2958 0.66 +0.0 386,991 - GFF2958 0.66 -0.3 386,991 - GFF2958 0.66 -0.2 386,991 - GFF2958 0.66 -0.5 386,991 - GFF2958 0.66 -0.2 386,991 - GFF2958 0.66 +1.6 386,991 - GFF2958 0.66 -0.5 386,991 - GFF2958 0.66 +0.6 387,144 - GFF2958 0.75 -0.7 387,144 - GFF2958 0.75 -0.9 387,144 - GFF2958 0.75 -0.7 387,144 - GFF2958 0.75 -0.8 387,497 + -0.2 387,497 + -0.4 387,497 + -0.4 387,497 + -0.1 387,498 - +0.6 387,498 - +1.2 387,624 + +0.6 387,639 + +0.1 387,639 + -0.1 387,639 + +0.8 387,639 + -0.0 387,639 + -0.0 387,640 - +0.6 387,640 - -1.5 388,006 + GFF2959 0.52 -0.4 388,006 + GFF2959 0.52 +0.0 388,006 + GFF2959 0.52 -0.8 388,007 - GFF2959 0.52 -2.2 388,007 - GFF2959 0.52 -1.0 388,007 - GFF2959 0.52 -0.7 388,007 - GFF2959 0.52 -0.7 388,120 + GFF2959 0.66 +0.2 388,120 + GFF2959 0.66 -1.5 388,120 + GFF2959 0.66 +0.2 388,222 + GFF2959 0.79 -1.4 388,222 + GFF2959 0.79 -0.3 388,222 + GFF2959 0.79 -0.3 388,222 + GFF2959 0.79 -1.7 388,222 + GFF2959 0.79 -1.8 388,222 + GFF2959 0.79 +0.0 388,240 + GFF2959 0.81 -0.1 388,240 + GFF2959 0.81 +0.3 388,240 + GFF2959 0.81 -0.4 388,240 + GFF2959 0.81 -0.7 388,241 - GFF2959 0.81 +1.0 388,676 + GFF2960 0.38 -0.5 388,677 - GFF2960 0.38 +0.1 388,677 - GFF2960 0.38 -0.4 388,677 - GFF2960 0.38 +0.4 388,677 - GFF2960 0.38 +0.2 388,749 - GFF2960 0.51 -1.2 388,749 - GFF2960 0.51 +0.6 388,907 + GFF2960 0.79 -0.2 388,908 - GFF2960 0.79 -0.1 388,908 - GFF2960 0.79 +0.0 388,908 - GFF2960 0.79 -0.4 388,908 - GFF2960 0.79 -0.6 389,021 + +0.5 389,021 + +0.3 389,022 - -0.1 389,022 - -0.6 389,022 - -0.0 389,022 - -1.2 389,022 - -0.1 389,033 - +0.7 389,033 - -0.3 389,069 + +0.3 389,069 + -1.6 389,069 + +0.1 389,069 + +1.0 389,069 + +0.9 389,070 - -0.5 389,070 - +0.2 389,070 - -0.0 389,070 - +0.1 389,075 + -0.6 389,076 - -0.6 389,083 + +0.1 389,083 + -0.7 389,083 + -0.1 389,083 + -0.5 389,083 + -0.4 389,084 - +0.7 389,084 - -0.6 389,084 - -1.6 389,084 - -0.2 389,084 - +0.1 389,084 - +1.2 389,154 + +0.2 389,154 + -1.3 389,154 + -0.1 389,154 + -1.2 389,154 + -0.9 389,155 - -0.4 389,155 - -0.7 389,155 - +0.0 389,155 - +1.2 389,155 - -1.7 389,155 - -0.9 389,155 - -0.2 389,155 - +0.8 389,271 + -0.3 389,271 + -0.1 389,271 + -0.4 389,271 + +0.1 389,272 - -0.7 389,272 - -0.1 389,272 - +0.2
Or see this region's nucleotide sequence