Strain Fitness in Variovorax sp. SCN45 around GFF295

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF294 and GFF295 are separated by 22 nucleotidesGFF295 and GFF296 are separated by 10 nucleotidesGFF296 and GFF297 are separated by 3 nucleotides GFF294 - Lipid A export permease/ATP-binding protein MsbA, at 327,954 to 329,621 GFF294 GFF295 - Ribonuclease G, at 329,644 to 331,170 GFF295 GFF296 - Septum formation protein Maf, at 331,181 to 331,783 GFF296 GFF297 - FIG00978250: hypothetical protein, at 331,787 to 332,500 GFF297 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.664 kb on - strandat 329.664 kb on - strandat 329.664 kb on - strandat 329.664 kb on - strandat 329.849 kb on + strand, within GFF295at 329.850 kb on - strand, within GFF295at 330.305 kb on + strand, within GFF295at 330.306 kb on - strand, within GFF295at 330.306 kb on - strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.335 kb on + strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.336 kb on - strand, within GFF295at 330.551 kb on + strand, within GFF295at 330.551 kb on + strand, within GFF295at 330.551 kb on + strand, within GFF295at 330.552 kb on - strand, within GFF295at 330.552 kb on - strand, within GFF295at 331.049 kb on + strandat 331.050 kb on - strandat 331.050 kb on - strandat 331.186 kb on + strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.187 kb on - strandat 331.238 kb on + strandat 331.251 kb on + strand, within GFF296at 331.252 kb on - strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.302 kb on + strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.303 kb on - strand, within GFF296at 331.342 kb on - strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.632 kb on + strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.633 kb on - strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.703 kb on + strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.704 kb on - strand, within GFF296at 331.767 kb on + strandat 331.767 kb on + strandat 331.767 kb on + strandat 331.768 kb on - strandat 331.768 kb on - strandat 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.095 kb on + strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.096 kb on - strand, within GFF297at 332.105 kb on + strand, within GFF297at 332.106 kb on - strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.148 kb on + strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.149 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297at 332.150 kb on - strand, within GFF297

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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329,664 - -0.5
329,664 - -0.7
329,664 - +0.4
329,664 - +1.3
329,849 + GFF295 0.13 +1.3
329,850 - GFF295 0.13 -1.0
330,305 + GFF295 0.43 -0.2
330,306 - GFF295 0.43 -1.9
330,306 - GFF295 0.43 -1.9
330,335 + GFF295 0.45 -0.0
330,335 + GFF295 0.45 -0.1
330,335 + GFF295 0.45 -0.5
330,335 + GFF295 0.45 +1.1
330,335 + GFF295 0.45 +0.3
330,335 + GFF295 0.45 -0.0
330,335 + GFF295 0.45 -0.3
330,335 + GFF295 0.45 +0.0
330,335 + GFF295 0.45 -0.2
330,336 - GFF295 0.45 -0.3
330,336 - GFF295 0.45 -1.9
330,336 - GFF295 0.45 -0.2
330,336 - GFF295 0.45 -1.6
330,336 - GFF295 0.45 -0.2
330,336 - GFF295 0.45 +0.4
330,336 - GFF295 0.45 +0.5
330,336 - GFF295 0.45 +0.1
330,336 - GFF295 0.45 -0.4
330,551 + GFF295 0.59 -0.5
330,551 + GFF295 0.59 +0.4
330,551 + GFF295 0.59 -0.6
330,552 - GFF295 0.59 -1.3
330,552 - GFF295 0.59 -1.4
331,049 + +1.6
331,050 - -0.3
331,050 - +1.0
331,186 + +0.3
331,187 - +0.2
331,187 - -0.3
331,187 - -0.8
331,187 - +1.0
331,238 + +2.3
331,251 + GFF296 0.12 -0.7
331,252 - GFF296 0.12 -0.1
331,302 + GFF296 0.20 +1.3
331,302 + GFF296 0.20 +1.3
331,302 + GFF296 0.20 -1.3
331,302 + GFF296 0.20 -0.1
331,302 + GFF296 0.20 -2.0
331,303 - GFF296 0.20 +0.1
331,303 - GFF296 0.20 -3.0
331,303 - GFF296 0.20 +0.9
331,303 - GFF296 0.20 -0.0
331,303 - GFF296 0.20 -0.0
331,303 - GFF296 0.20 +0.4
331,303 - GFF296 0.20 +0.1
331,303 - GFF296 0.20 -1.9
331,342 - GFF296 0.27 +1.3
331,632 + GFF296 0.75 -0.7
331,632 + GFF296 0.75 +0.5
331,632 + GFF296 0.75 +1.2
331,632 + GFF296 0.75 +0.9
331,632 + GFF296 0.75 -0.3
331,632 + GFF296 0.75 -0.6
331,633 - GFF296 0.75 +1.3
331,633 - GFF296 0.75 -0.1
331,633 - GFF296 0.75 -0.3
331,633 - GFF296 0.75 -0.0
331,633 - GFF296 0.75 -0.1
331,633 - GFF296 0.75 -0.2
331,633 - GFF296 0.75 +0.7
331,633 - GFF296 0.75 -0.4
331,703 + GFF296 0.87 +0.1
331,703 + GFF296 0.87 +0.4
331,703 + GFF296 0.87 -0.9
331,704 - GFF296 0.87 +0.2
331,704 - GFF296 0.87 +0.6
331,704 - GFF296 0.87 +0.3
331,704 - GFF296 0.87 +0.3
331,767 + -0.2
331,767 + -0.9
331,767 + -1.5
331,768 - -0.1
331,768 - +1.3
332,095 + GFF297 0.43 +0.2
332,095 + GFF297 0.43 -0.3
332,095 + GFF297 0.43 -2.6
332,095 + GFF297 0.43 -0.5
332,095 + GFF297 0.43 +0.0
332,096 - GFF297 0.43 -0.2
332,096 - GFF297 0.43 -1.7
332,096 - GFF297 0.43 -0.2
332,105 + GFF297 0.45 -0.3
332,106 - GFF297 0.45 +0.1
332,148 + GFF297 0.51 -0.5
332,148 + GFF297 0.51 -0.5
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 -0.3
332,148 + GFF297 0.51 -0.0
332,148 + GFF297 0.51 -0.5
332,148 + GFF297 0.51 +1.3
332,148 + GFF297 0.51 -0.7
332,148 + GFF297 0.51 -0.4
332,148 + GFF297 0.51 -0.0
332,148 + GFF297 0.51 -1.6
332,149 - GFF297 0.51 -0.9
332,149 - GFF297 0.51 +0.3
332,149 - GFF297 0.51 -0.2
332,149 - GFF297 0.51 +0.1
332,150 - GFF297 0.51 +0.8
332,150 - GFF297 0.51 +0.3

Or see this region's nucleotide sequence