Strain Fitness in Variovorax sp. SCN45 around GFF293

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF292 and GFF293 are separated by 198 nucleotidesGFF293 and GFF294 are separated by 27 nucleotides GFF292 - Tol-Pal system beta propeller repeat protein TolB, at 326,358 to 327,584 GFF292 GFF293 - no description, at 327,783 to 327,926 GFF293 GFF294 - Lipid A export permease/ATP-binding protein MsbA, at 327,954 to 329,621 GFF294 Position (kb) 327 328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 326.977 kb on + strand, within GFF292at 326.977 kb on + strand, within GFF292at 326.978 kb on - strand, within GFF292at 326.978 kb on - strand, within GFF292at 326.978 kb on - strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.010 kb on + strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.011 kb on - strand, within GFF292at 327.118 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.142 kb on + strand, within GFF292at 327.143 kb on - strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.190 kb on + strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.191 kb on - strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.196 kb on + strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.197 kb on - strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.247 kb on + strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.248 kb on - strand, within GFF292at 327.335 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.423 kb on + strand, within GFF292at 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.627 kb on + strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.628 kb on - strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.731 kb on + strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.732 kb on - strandat 327.767 kb on - strandat 327.784 kb on + strandat 327.785 kb on - strandat 327.785 kb on - strandat 327.785 kb on - strandat 327.823 kb on + strand, within GFF293at 327.823 kb on + strand, within GFF293at 327.824 kb on - strand, within GFF293at 327.824 kb on - strand, within GFF293

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
326,977 + GFF292 0.50 +0.1
326,977 + GFF292 0.50 +0.7
326,978 - GFF292 0.51 -0.9
326,978 - GFF292 0.51 -0.7
326,978 - GFF292 0.51 -0.7
327,010 + GFF292 0.53 -1.6
327,010 + GFF292 0.53 -0.6
327,010 + GFF292 0.53 -0.6
327,010 + GFF292 0.53 -1.0
327,010 + GFF292 0.53 +2.3
327,010 + GFF292 0.53 -1.1
327,010 + GFF292 0.53 -0.8
327,010 + GFF292 0.53 -2.4
327,010 + GFF292 0.53 -1.3
327,010 + GFF292 0.53 -0.9
327,010 + GFF292 0.53 -1.3
327,010 + GFF292 0.53 -0.7
327,010 + GFF292 0.53 -0.7
327,010 + GFF292 0.53 +0.3
327,011 - GFF292 0.53 -0.9
327,011 - GFF292 0.53 -0.0
327,011 - GFF292 0.53 +1.3
327,011 - GFF292 0.53 -2.6
327,011 - GFF292 0.53 +0.1
327,011 - GFF292 0.53 -0.4
327,011 - GFF292 0.53 -1.1
327,011 - GFF292 0.53 -0.0
327,011 - GFF292 0.53 -0.5
327,011 - GFF292 0.53 -1.4
327,011 - GFF292 0.53 -2.0
327,011 - GFF292 0.53 -1.5
327,011 - GFF292 0.53 -0.3
327,011 - GFF292 0.53 -1.4
327,011 - GFF292 0.53 -0.1
327,011 - GFF292 0.53 -1.2
327,011 - GFF292 0.53 +0.1
327,118 + GFF292 0.62 -0.7
327,142 + GFF292 0.64 -1.2
327,142 + GFF292 0.64 -0.6
327,142 + GFF292 0.64 -1.3
327,143 - GFF292 0.64 -1.0
327,190 + GFF292 0.68 +0.7
327,190 + GFF292 0.68 -3.2
327,190 + GFF292 0.68 -0.4
327,190 + GFF292 0.68 -0.9
327,190 + GFF292 0.68 -0.3
327,191 - GFF292 0.68 -0.7
327,191 - GFF292 0.68 +0.4
327,191 - GFF292 0.68 -0.9
327,191 - GFF292 0.68 -0.5
327,191 - GFF292 0.68 -1.0
327,196 + GFF292 0.68 +0.1
327,196 + GFF292 0.68 +0.3
327,196 + GFF292 0.68 -2.6
327,196 + GFF292 0.68 -0.5
327,196 + GFF292 0.68 -1.3
327,196 + GFF292 0.68 -0.9
327,197 - GFF292 0.68 -0.4
327,197 - GFF292 0.68 -2.0
327,197 - GFF292 0.68 -1.9
327,197 - GFF292 0.68 -0.5
327,247 + GFF292 0.72 -1.3
327,247 + GFF292 0.72 -0.2
327,247 + GFF292 0.72 -0.6
327,247 + GFF292 0.72 -0.9
327,247 + GFF292 0.72 -0.6
327,248 - GFF292 0.73 -0.9
327,248 - GFF292 0.73 -0.7
327,248 - GFF292 0.73 -1.0
327,248 - GFF292 0.73 -0.3
327,248 - GFF292 0.73 +0.1
327,248 - GFF292 0.73 -0.9
327,335 + GFF292 0.80 +0.7
327,423 + GFF292 0.87 -0.7
327,423 + GFF292 0.87 -0.3
327,423 + GFF292 0.87 -0.1
327,423 + GFF292 0.87 -1.7
327,627 + -0.1
327,627 + -0.5
327,627 + -0.0
327,627 + -0.6
327,627 + +0.1
327,628 - -1.5
327,628 - -1.2
327,628 - -0.8
327,628 - -0.2
327,731 + -0.5
327,731 + -0.6
327,731 + -1.0
327,731 + -0.6
327,731 + +0.3
327,731 + -0.0
327,731 + -0.3
327,731 + -0.4
327,732 - -0.3
327,732 - -0.7
327,732 - +0.5
327,732 - +0.2
327,767 - -2.2
327,784 + -0.1
327,785 - -0.6
327,785 - -0.5
327,785 - +0.5
327,823 + GFF293 0.28 -0.7
327,823 + GFF293 0.28 -1.1
327,824 - GFF293 0.28 -0.6
327,824 - GFF293 0.28 -0.3

Or see this region's nucleotide sequence