Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2918 and GFF2919 are separated by 142 nucleotides GFF2919 and GFF2920 overlap by 10 nucleotides GFF2920 and GFF2921 are separated by 18 nucleotides
GFF2918 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 344,731 to 345,723
GFF2918
GFF2919 - no description, at 345,866 to 346,360
GFF2919
GFF2920 - TRAP-type C4-dicarboxylate transport system, large permease component, at 346,351 to 347,703
GFF2920
GFF2921 - D-galactarate dehydratase (EC 4.2.1.42), at 347,722 to 349,302
GFF2921
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.367 kb on + strand, within GFF2918 at 345.367 kb on + strand, within GFF2918 at 345.368 kb on - strand, within GFF2918 at 345.368 kb on - strand, within GFF2918 at 345.377 kb on - strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.914 kb on + strand at 345.914 kb on + strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.977 kb on + strand, within GFF2919 at 346.001 kb on + strand, within GFF2919 at 346.001 kb on + strand, within GFF2919 at 346.002 kb on - strand, within GFF2919 at 346.148 kb on + strand, within GFF2919 at 346.149 kb on - strand, within GFF2919 at 346.149 kb on - strand, within GFF2919 at 346.259 kb on + strand, within GFF2919 at 346.259 kb on + strand, within GFF2919 at 346.738 kb on + strand, within GFF2920 at 346.739 kb on - strand, within GFF2920 at 346.751 kb on - strand, within GFF2920 at 346.822 kb on + strand, within GFF2920 at 346.823 kb on - strand, within GFF2920 at 347.150 kb on - strand, within GFF2920 at 347.150 kb on - strand, within GFF2920 at 347.290 kb on + strand, within GFF2920 at 347.290 kb on + strand, within GFF2920 at 347.290 kb on + strand, within GFF2920 at 347.291 kb on - strand, within GFF2920 at 347.362 kb on + strand, within GFF2920 at 347.362 kb on + strand, within GFF2920 at 347.362 kb on + strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.363 kb on - strand, within GFF2920 at 347.562 kb on - strand, within GFF2920 at 347.570 kb on + strand at 347.571 kb on - strand at 347.605 kb on + strand at 347.608 kb on + strand at 347.608 kb on + strand at 347.609 kb on - strand at 347.609 kb on - strand at 347.644 kb on + strand at 347.644 kb on + strand at 347.644 kb on + strand at 347.645 kb on - strand at 347.645 kb on - strand at 347.701 kb on + strand at 347.701 kb on + strand at 347.702 kb on - strand at 347.755 kb on + strand at 347.755 kb on + strand at 347.755 kb on + strand at 347.917 kb on + strand, within GFF2921 at 347.918 kb on - strand, within GFF2921 at 347.918 kb on - strand, within GFF2921 at 348.064 kb on + strand, within GFF2921 at 348.064 kb on + strand, within GFF2921 at 348.064 kb on + strand, within GFF2921 at 348.065 kb on - strand, within GFF2921 at 348.065 kb on - strand, within GFF2921 at 348.065 kb on - strand, within GFF2921 at 348.242 kb on - strand, within GFF2921
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 345,367 + GFF2918 0.64 -0.7 345,367 + GFF2918 0.64 -1.6 345,368 - GFF2918 0.64 +1.6 345,368 - GFF2918 0.64 -0.0 345,377 - GFF2918 0.65 +0.6 345,535 + GFF2918 0.81 -0.1 345,535 + GFF2918 0.81 +0.3 345,535 + GFF2918 0.81 +1.0 345,536 - GFF2918 0.81 -0.3 345,536 - GFF2918 0.81 -1.0 345,536 - GFF2918 0.81 -0.4 345,536 - GFF2918 0.81 -1.3 345,914 + +0.8 345,914 + -0.4 345,915 - -1.8 345,915 - -0.7 345,915 - +0.1 345,915 - -1.0 345,915 - -0.9 345,977 + GFF2919 0.22 -0.3 346,001 + GFF2919 0.27 -0.3 346,001 + GFF2919 0.27 -0.5 346,002 - GFF2919 0.27 +0.0 346,148 + GFF2919 0.57 +0.2 346,149 - GFF2919 0.57 +0.2 346,149 - GFF2919 0.57 -0.9 346,259 + GFF2919 0.79 -0.1 346,259 + GFF2919 0.79 +0.1 346,738 + GFF2920 0.29 -0.7 346,739 - GFF2920 0.29 -0.0 346,751 - GFF2920 0.30 -0.8 346,822 + GFF2920 0.35 -1.6 346,823 - GFF2920 0.35 +1.4 347,150 - GFF2920 0.59 -0.6 347,150 - GFF2920 0.59 +0.6 347,290 + GFF2920 0.69 +0.0 347,290 + GFF2920 0.69 -0.7 347,290 + GFF2920 0.69 +0.1 347,291 - GFF2920 0.69 +0.0 347,362 + GFF2920 0.75 -0.4 347,362 + GFF2920 0.75 -0.2 347,362 + GFF2920 0.75 -0.5 347,363 - GFF2920 0.75 -0.6 347,363 - GFF2920 0.75 -1.7 347,363 - GFF2920 0.75 -0.7 347,363 - GFF2920 0.75 +0.4 347,363 - GFF2920 0.75 -0.4 347,363 - GFF2920 0.75 +0.3 347,562 - GFF2920 0.90 +0.5 347,570 + -0.2 347,571 - +0.0 347,605 + +1.6 347,608 + +0.5 347,608 + +0.7 347,609 - +0.9 347,609 - -0.3 347,644 + -1.6 347,644 + +0.0 347,644 + -0.3 347,645 - +0.6 347,645 - +1.6 347,701 + -0.1 347,701 + +0.6 347,702 - -0.7 347,755 + -0.2 347,755 + -0.6 347,755 + +0.4 347,917 + GFF2921 0.12 -0.2 347,918 - GFF2921 0.12 -1.0 347,918 - GFF2921 0.12 -0.9 348,064 + GFF2921 0.22 -0.2 348,064 + GFF2921 0.22 +0.3 348,064 + GFF2921 0.22 +0.6 348,065 - GFF2921 0.22 +1.0 348,065 - GFF2921 0.22 +1.8 348,065 - GFF2921 0.22 -0.6 348,242 - GFF2921 0.33 -0.1
Or see this region's nucleotide sequence