Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2893 and GFF2894 are separated by 41 nucleotides GFF2894 and GFF2895 overlap by 4 nucleotides
GFF2893 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 318,841 to 319,827
GFF2893
GFF2894 - Transcriptional regulator, GntR family, at 319,869 to 320,651
GFF2894
GFF2895 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 320,648 to 321,766
GFF2895
Position (kb) 319
320
321 Strain fitness (log2 ratio) -1
0
1 at 319.244 kb on + strand, within GFF2893 at 319.244 kb on + strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.245 kb on - strand, within GFF2893 at 319.355 kb on + strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.386 kb on - strand, within GFF2893 at 319.652 kb on + strand, within GFF2893 at 319.652 kb on + strand, within GFF2893 at 319.653 kb on - strand, within GFF2893 at 319.718 kb on + strand, within GFF2893 at 320.216 kb on - strand, within GFF2894 at 320.216 kb on - strand, within GFF2894 at 320.410 kb on + strand, within GFF2894 at 320.411 kb on - strand, within GFF2894 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.781 kb on + strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.782 kb on - strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.907 kb on + strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.908 kb on - strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.931 kb on + strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.932 kb on - strand, within GFF2895 at 320.976 kb on + strand, within GFF2895 at 321.531 kb on + strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895 at 321.532 kb on - strand, within GFF2895
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 319,244 + GFF2893 0.41 -0.0 319,244 + GFF2893 0.41 -0.3 319,245 - GFF2893 0.41 +0.1 319,245 - GFF2893 0.41 +0.4 319,245 - GFF2893 0.41 +0.0 319,245 - GFF2893 0.41 +0.3 319,245 - GFF2893 0.41 -0.4 319,355 + GFF2893 0.52 -0.6 319,386 - GFF2893 0.55 +0.6 319,386 - GFF2893 0.55 -0.4 319,386 - GFF2893 0.55 -0.2 319,652 + GFF2893 0.82 -0.0 319,652 + GFF2893 0.82 -0.7 319,653 - GFF2893 0.82 -0.3 319,718 + GFF2893 0.89 -0.8 320,216 - GFF2894 0.44 -0.3 320,216 - GFF2894 0.44 -0.6 320,410 + GFF2894 0.69 -0.8 320,411 - GFF2894 0.69 -0.7 320,781 + GFF2895 0.12 -0.5 320,781 + GFF2895 0.12 -0.7 320,781 + GFF2895 0.12 -0.4 320,782 - GFF2895 0.12 +0.4 320,782 - GFF2895 0.12 -0.5 320,782 - GFF2895 0.12 -0.6 320,907 + GFF2895 0.23 -0.3 320,907 + GFF2895 0.23 +1.1 320,907 + GFF2895 0.23 +0.1 320,907 + GFF2895 0.23 -1.3 320,907 + GFF2895 0.23 +0.2 320,908 - GFF2895 0.23 -0.4 320,908 - GFF2895 0.23 +0.4 320,908 - GFF2895 0.23 -0.3 320,908 - GFF2895 0.23 +0.0 320,931 + GFF2895 0.25 +0.3 320,931 + GFF2895 0.25 -0.2 320,932 - GFF2895 0.25 -0.2 320,932 - GFF2895 0.25 -0.1 320,932 - GFF2895 0.25 -0.7 320,932 - GFF2895 0.25 +0.0 320,976 + GFF2895 0.29 -0.1 321,531 + GFF2895 0.79 -0.5 321,532 - GFF2895 0.79 +0.6 321,532 - GFF2895 0.79 +0.0 321,532 - GFF2895 0.79 -1.6
Or see this region's nucleotide sequence