Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF286 and GFF287 are separated by 2 nucleotides GFF287 and GFF288 are separated by 181 nucleotides GFF288 and GFF289 are separated by 387 nucleotides
GFF286 - Transcriptional regulator, LysR family, at 321,149 to 322,042
GFF286
GFF287 - hypothetical protein, at 322,045 to 323,301
GFF287
GFF288 - no description, at 323,483 to 323,812
GFF288
GFF289 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, at 324,200 to 325,045
GFF289
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 321.052 kb on + strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.053 kb on - strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.085 kb on + strand at 321.086 kb on - strand at 321.086 kb on - strand at 321.086 kb on - strand at 321.170 kb on + strand at 321.170 kb on + strand at 321.171 kb on - strand at 321.171 kb on - strand at 321.171 kb on - strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.224 kb on + strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.225 kb on - strand at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.282 kb on + strand, within GFF286 at 321.283 kb on - strand, within GFF286 at 321.283 kb on - strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.314 kb on + strand, within GFF286 at 321.488 kb on + strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.489 kb on - strand, within GFF286 at 321.490 kb on - strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.638 kb on + strand, within GFF286 at 321.639 kb on - strand, within GFF286 at 321.764 kb on + strand, within GFF286 at 321.765 kb on - strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.923 kb on + strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.924 kb on - strand, within GFF286 at 321.962 kb on + strand at 321.962 kb on + strand at 321.962 kb on + strand at 321.963 kb on - strand at 321.963 kb on - strand at 322.046 kb on + strand at 322.265 kb on + strand, within GFF287 at 322.265 kb on + strand, within GFF287 at 322.265 kb on + strand, within GFF287 at 322.265 kb on + strand, within GFF287 at 322.265 kb on + strand, within GFF287 at 322.265 kb on + strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.266 kb on - strand, within GFF287 at 322.442 kb on - strand, within GFF287 at 322.568 kb on + strand, within GFF287 at 322.569 kb on - strand, within GFF287 at 322.569 kb on - strand, within GFF287 at 322.719 kb on - strand, within GFF287 at 323.196 kb on - strand at 323.196 kb on - strand at 323.196 kb on - strand at 323.296 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.360 kb on + strand at 323.361 kb on - strand at 323.361 kb on - strand at 323.361 kb on - strand at 323.361 kb on - strand at 323.361 kb on - strand at 323.377 kb on - strand at 323.386 kb on - strand at 323.387 kb on - strand at 323.410 kb on + strand at 323.421 kb on + strand at 323.479 kb on + strand at 323.479 kb on + strand at 323.479 kb on + strand at 323.479 kb on + strand at 323.479 kb on + strand at 323.479 kb on + strand at 323.509 kb on + strand at 323.509 kb on + strand at 323.509 kb on + strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.510 kb on - strand at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.526 kb on + strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.527 kb on - strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.538 kb on + strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.539 kb on - strand, within GFF288 at 323.689 kb on + strand, within GFF288 at 323.689 kb on + strand, within GFF288 at 323.690 kb on - strand, within GFF288 at 323.690 kb on - strand, within GFF288 at 323.690 kb on - strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.691 kb on + strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.692 kb on - strand, within GFF288 at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.812 kb on + strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 323.813 kb on - strand at 324.017 kb on + strand at 324.017 kb on + strand at 324.017 kb on + strand at 324.018 kb on - strand at 324.079 kb on - strand at 324.079 kb on - strand at 324.079 kb on - strand at 324.079 kb on - strand at 324.196 kb on - strand at 324.204 kb on - strand at 324.204 kb on - strand at 324.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 321,052 + -0.8 321,053 - +0.1 321,053 - -1.0 321,053 - -0.0 321,053 - -0.1 321,053 - +0.3 321,053 - +0.3 321,053 - -0.1 321,085 + +0.6 321,085 + +0.3 321,085 + -2.4 321,085 + -1.2 321,085 + +0.3 321,085 + +0.2 321,086 - -0.2 321,086 - +1.1 321,086 - +0.1 321,170 + +0.4 321,170 + -0.9 321,171 - -0.6 321,171 - +1.3 321,171 - +0.8 321,224 + -0.4 321,224 + -1.6 321,224 + -0.6 321,224 + +0.2 321,224 + -0.1 321,224 + -0.0 321,224 + +1.6 321,225 - -0.4 321,225 - +0.5 321,225 - -2.3 321,225 - -0.3 321,225 - -1.0 321,225 - -0.7 321,225 - +0.7 321,225 - -0.0 321,225 - +0.0 321,282 + GFF286 0.15 -1.5 321,282 + GFF286 0.15 -0.3 321,282 + GFF286 0.15 -0.0 321,282 + GFF286 0.15 -0.8 321,283 - GFF286 0.15 -0.0 321,283 - GFF286 0.15 +0.0 321,314 + GFF286 0.18 +0.8 321,314 + GFF286 0.18 -1.4 321,314 + GFF286 0.18 -0.3 321,314 + GFF286 0.18 -1.4 321,488 + GFF286 0.38 +0.4 321,489 - GFF286 0.38 +0.0 321,489 - GFF286 0.38 -0.5 321,489 - GFF286 0.38 -2.9 321,490 - GFF286 0.38 -0.7 321,638 + GFF286 0.55 +0.1 321,638 + GFF286 0.55 -0.4 321,638 + GFF286 0.55 -0.3 321,639 - GFF286 0.55 +0.1 321,764 + GFF286 0.69 -0.1 321,765 - GFF286 0.69 -0.3 321,923 + GFF286 0.87 +0.5 321,923 + GFF286 0.87 +0.4 321,923 + GFF286 0.87 -0.2 321,924 - GFF286 0.87 +0.8 321,924 - GFF286 0.87 +0.7 321,924 - GFF286 0.87 +0.7 321,962 + +1.3 321,962 + -1.2 321,962 + +0.6 321,963 - +0.3 321,963 - -0.0 322,046 + +0.3 322,265 + GFF287 0.18 -0.8 322,265 + GFF287 0.18 +0.6 322,265 + GFF287 0.18 +1.6 322,265 + GFF287 0.18 +1.3 322,265 + GFF287 0.18 +1.3 322,265 + GFF287 0.18 -0.1 322,266 - GFF287 0.18 +0.3 322,266 - GFF287 0.18 -0.1 322,266 - GFF287 0.18 +0.2 322,266 - GFF287 0.18 +0.6 322,266 - GFF287 0.18 -0.1 322,266 - GFF287 0.18 +0.0 322,266 - GFF287 0.18 -0.2 322,266 - GFF287 0.18 -0.0 322,266 - GFF287 0.18 -0.3 322,266 - GFF287 0.18 -0.9 322,442 - GFF287 0.32 +1.1 322,568 + GFF287 0.42 +0.1 322,569 - GFF287 0.42 +0.9 322,569 - GFF287 0.42 -0.3 322,719 - GFF287 0.54 +0.9 323,196 - -0.7 323,196 - +0.0 323,196 - -0.7 323,296 + -0.0 323,360 + +0.2 323,360 + -0.4 323,360 + -0.3 323,360 + -0.8 323,360 + -0.1 323,360 + -0.0 323,360 + -0.2 323,360 + -0.1 323,361 - -0.1 323,361 - +0.6 323,361 - -0.7 323,361 - -0.9 323,361 - +0.3 323,377 - +1.5 323,386 - -0.0 323,387 - -0.5 323,410 + +0.0 323,421 + -0.1 323,479 + -0.5 323,479 + +1.3 323,479 + -0.1 323,479 + +0.7 323,479 + +2.9 323,479 + -0.2 323,509 + +0.0 323,509 + -0.0 323,509 + -0.4 323,510 - -0.2 323,510 - -1.7 323,510 - -1.0 323,510 - +1.1 323,510 - -0.3 323,510 - +0.0 323,510 - -0.1 323,510 - -0.7 323,510 - +0.3 323,526 + GFF288 0.13 -0.7 323,526 + GFF288 0.13 -0.8 323,526 + GFF288 0.13 +1.3 323,526 + GFF288 0.13 -0.2 323,526 + GFF288 0.13 +1.9 323,526 + GFF288 0.13 -0.3 323,526 + GFF288 0.13 -0.5 323,526 + GFF288 0.13 -0.0 323,526 + GFF288 0.13 -0.0 323,526 + GFF288 0.13 -0.6 323,526 + GFF288 0.13 -0.4 323,526 + GFF288 0.13 +1.0 323,527 - GFF288 0.13 -0.6 323,527 - GFF288 0.13 -0.6 323,527 - GFF288 0.13 -0.2 323,527 - GFF288 0.13 -0.2 323,527 - GFF288 0.13 +1.6 323,527 - GFF288 0.13 -0.9 323,527 - GFF288 0.13 -0.1 323,527 - GFF288 0.13 +0.5 323,527 - GFF288 0.13 -1.0 323,527 - GFF288 0.13 -0.3 323,527 - GFF288 0.13 +0.1 323,538 + GFF288 0.17 -0.3 323,538 + GFF288 0.17 -0.3 323,538 + GFF288 0.17 +0.6 323,538 + GFF288 0.17 -0.1 323,538 + GFF288 0.17 -1.2 323,538 + GFF288 0.17 -0.4 323,538 + GFF288 0.17 -0.3 323,538 + GFF288 0.17 -1.4 323,538 + GFF288 0.17 +0.5 323,538 + GFF288 0.17 +0.0 323,538 + GFF288 0.17 +0.6 323,538 + GFF288 0.17 -1.5 323,539 - GFF288 0.17 -0.0 323,539 - GFF288 0.17 -0.3 323,539 - GFF288 0.17 +0.2 323,539 - GFF288 0.17 -0.1 323,539 - GFF288 0.17 -1.0 323,539 - GFF288 0.17 -0.4 323,539 - GFF288 0.17 -0.5 323,539 - GFF288 0.17 -1.1 323,539 - GFF288 0.17 -0.5 323,539 - GFF288 0.17 -0.4 323,689 + GFF288 0.62 -1.3 323,689 + GFF288 0.62 -0.3 323,690 - GFF288 0.63 +0.1 323,690 - GFF288 0.63 -0.3 323,690 - GFF288 0.63 -0.5 323,691 + GFF288 0.63 -0.4 323,691 + GFF288 0.63 -1.0 323,691 + GFF288 0.63 -0.2 323,691 + GFF288 0.63 -1.1 323,691 + GFF288 0.63 -1.2 323,691 + GFF288 0.63 +0.2 323,691 + GFF288 0.63 -0.5 323,691 + GFF288 0.63 +0.4 323,691 + GFF288 0.63 -0.4 323,691 + GFF288 0.63 +0.2 323,692 - GFF288 0.63 -1.9 323,692 - GFF288 0.63 +0.1 323,692 - GFF288 0.63 -0.2 323,692 - GFF288 0.63 -0.1 323,692 - GFF288 0.63 -1.6 323,692 - GFF288 0.63 +0.5 323,812 + -1.5 323,812 + -0.5 323,812 + +1.3 323,812 + +0.1 323,812 + +0.4 323,812 + -0.1 323,812 + +0.4 323,812 + +1.1 323,812 + -0.2 323,813 - -0.4 323,813 - -0.3 323,813 - +0.3 323,813 - -0.3 323,813 - +0.2 323,813 - -0.6 323,813 - +0.0 323,813 - -0.2 323,813 - -1.0 324,017 + -0.3 324,017 + -0.1 324,017 + +0.5 324,018 - -0.5 324,079 - -0.3 324,079 - -0.3 324,079 - -0.1 324,079 - +0.4 324,196 - -1.0 324,204 - -0.7 324,204 - +0.5 324,204 - +0.2
Or see this region's nucleotide sequence