Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2846 and GFF2847 are separated by 87 nucleotides GFF2847 and GFF2848 are separated by 433 nucleotides GFF2848 and GFF2849 are separated by 152 nucleotides GFF2849 and GFF2850 are separated by 47 nucleotides GFF2850 and GFF2851 are separated by 21 nucleotides
GFF2846 - Putative Zn-dependent oxidoreductase PA5234, at 270,741 to 271,727
GFF2846
GFF2847 - histone-like nucleoid-structuring protein H-NS, at 271,815 to 272,159
GFF2847
GFF2848 - UPF0098 protein PH1269, at 272,593 to 273,225
GFF2848
GFF2849 - hypothetical protein, at 273,378 to 273,626
GFF2849
GFF2850 - hypothetical protein, at 273,674 to 273,970
GFF2850
GFF2851 - Phosphoglycerate mutase family protein, at 273,992 to 274,666
GFF2851
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 271.609 kb on - strand, within GFF2846 at 271.675 kb on - strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.816 kb on + strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.817 kb on - strand at 271.924 kb on + strand, within GFF2847 at 271.924 kb on + strand, within GFF2847 at 272.017 kb on + strand, within GFF2847 at 272.018 kb on - strand, within GFF2847 at 272.069 kb on + strand, within GFF2847 at 272.138 kb on + strand at 272.139 kb on - strand at 272.256 kb on + strand at 272.277 kb on - strand at 272.303 kb on - strand at 272.303 kb on - strand at 272.303 kb on - strand at 272.387 kb on + strand at 272.387 kb on + strand at 272.388 kb on - strand at 272.388 kb on - strand at 272.402 kb on + strand at 272.402 kb on + strand at 272.403 kb on - strand at 272.403 kb on - strand at 272.403 kb on - strand at 272.403 kb on - strand at 272.403 kb on - strand at 272.412 kb on + strand at 272.413 kb on - strand at 272.413 kb on - strand at 272.413 kb on - strand at 272.426 kb on + strand at 272.783 kb on + strand, within GFF2848 at 272.783 kb on + strand, within GFF2848 at 272.784 kb on - strand, within GFF2848 at 272.784 kb on - strand, within GFF2848 at 272.784 kb on - strand, within GFF2848 at 272.784 kb on - strand, within GFF2848 at 272.784 kb on - strand, within GFF2848 at 272.891 kb on - strand, within GFF2848 at 273.065 kb on + strand, within GFF2848 at 273.065 kb on + strand, within GFF2848 at 273.065 kb on + strand, within GFF2848 at 273.065 kb on + strand, within GFF2848 at 273.115 kb on + strand, within GFF2848 at 273.116 kb on - strand, within GFF2848 at 273.116 kb on - strand, within GFF2848 at 273.152 kb on - strand, within GFF2848 at 273.153 kb on - strand, within GFF2848 at 273.234 kb on + strand at 273.234 kb on + strand at 273.235 kb on - strand at 273.236 kb on + strand at 273.236 kb on + strand at 273.236 kb on + strand at 273.237 kb on - strand at 273.237 kb on - strand at 273.237 kb on - strand at 273.237 kb on - strand at 273.237 kb on - strand at 273.251 kb on + strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.252 kb on - strand at 273.261 kb on + strand at 273.262 kb on - strand at 273.262 kb on - strand at 273.262 kb on - strand at 273.297 kb on + strand at 273.298 kb on - strand at 273.298 kb on - strand at 273.308 kb on + strand at 273.309 kb on - strand at 273.309 kb on - strand at 273.309 kb on - strand at 273.309 kb on - strand at 273.368 kb on + strand at 273.395 kb on + strand at 273.395 kb on + strand at 273.395 kb on + strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.396 kb on - strand at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.510 kb on + strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.511 kb on - strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.534 kb on + strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.535 kb on - strand, within GFF2849 at 273.600 kb on + strand, within GFF2849 at 273.601 kb on - strand, within GFF2849 at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.671 kb on + strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.672 kb on - strand at 273.734 kb on + strand, within GFF2850 at 273.735 kb on - strand, within GFF2850 at 273.735 kb on - strand, within GFF2850 at 273.758 kb on + strand, within GFF2850 at 273.758 kb on + strand, within GFF2850 at 273.758 kb on + strand, within GFF2850 at 273.758 kb on + strand, within GFF2850 at 273.758 kb on + strand, within GFF2850 at 273.759 kb on - strand, within GFF2850 at 273.759 kb on - strand, within GFF2850 at 273.759 kb on - strand, within GFF2850 at 273.759 kb on - strand, within GFF2850 at 273.759 kb on - strand, within GFF2850 at 273.869 kb on + strand, within GFF2850 at 273.869 kb on + strand, within GFF2850 at 273.869 kb on + strand, within GFF2850 at 273.869 kb on + strand, within GFF2850 at 273.870 kb on - strand, within GFF2850 at 273.870 kb on - strand, within GFF2850 at 273.870 kb on - strand, within GFF2850 at 273.878 kb on + strand, within GFF2850 at 273.878 kb on + strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.879 kb on - strand, within GFF2850 at 273.894 kb on - strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.924 kb on + strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.925 kb on - strand, within GFF2850 at 273.950 kb on + strand at 273.999 kb on + strand at 273.999 kb on + strand at 273.999 kb on + strand at 273.999 kb on + strand at 273.999 kb on + strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.000 kb on - strand at 274.017 kb on + strand at 274.017 kb on + strand at 274.017 kb on + strand at 274.017 kb on + strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.018 kb on - strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.050 kb on + strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.051 kb on - strand at 274.102 kb on + strand, within GFF2851 at 274.102 kb on + strand, within GFF2851 at 274.102 kb on + strand, within GFF2851 at 274.102 kb on + strand, within GFF2851 at 274.102 kb on + strand, within GFF2851 at 274.102 kb on + strand, within GFF2851 at 274.103 kb on - strand, within GFF2851 at 274.103 kb on - strand, within GFF2851 at 274.103 kb on - strand, within GFF2851 at 274.103 kb on - strand, within GFF2851
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 271,609 - GFF2846 0.88 +3.2 271,675 - -0.3 271,816 + +0.3 271,816 + -0.5 271,816 + +0.2 271,816 + -1.2 271,816 + -0.4 271,816 + -1.2 271,816 + -0.3 271,816 + -0.4 271,816 + +0.2 271,816 + +0.2 271,816 + -0.8 271,816 + -1.0 271,816 + -0.2 271,816 + +0.4 271,817 - +0.0 271,817 - -0.1 271,817 - +2.6 271,817 - -0.0 271,817 - -0.5 271,817 - -1.5 271,817 - -0.4 271,817 - -0.1 271,817 - -1.0 271,817 - +0.5 271,924 + GFF2847 0.32 -0.7 271,924 + GFF2847 0.32 -0.8 272,017 + GFF2847 0.59 -0.5 272,018 - GFF2847 0.59 -0.4 272,069 + GFF2847 0.74 +0.0 272,138 + -0.7 272,139 - +0.9 272,256 + +0.5 272,277 - -0.0 272,303 - +0.0 272,303 - -0.2 272,303 - -0.0 272,387 + -0.4 272,387 + -0.8 272,388 - -1.0 272,388 - -1.4 272,402 + -0.3 272,402 + -0.9 272,403 - -0.4 272,403 - +0.0 272,403 - -0.1 272,403 - -2.0 272,403 - +1.9 272,412 + -0.4 272,413 - -0.7 272,413 - -0.3 272,413 - -0.2 272,426 + -0.4 272,783 + GFF2848 0.30 -0.5 272,783 + GFF2848 0.30 -0.4 272,784 - GFF2848 0.30 +0.2 272,784 - GFF2848 0.30 -0.2 272,784 - GFF2848 0.30 +0.2 272,784 - GFF2848 0.30 -0.7 272,784 - GFF2848 0.30 +0.1 272,891 - GFF2848 0.47 +0.7 273,065 + GFF2848 0.75 -0.6 273,065 + GFF2848 0.75 +0.5 273,065 + GFF2848 0.75 +0.6 273,065 + GFF2848 0.75 +0.7 273,115 + GFF2848 0.82 +0.9 273,116 - GFF2848 0.83 +1.3 273,116 - GFF2848 0.83 +0.6 273,152 - GFF2848 0.88 -0.5 273,153 - GFF2848 0.88 -0.6 273,234 + +0.3 273,234 + -0.3 273,235 - +2.2 273,236 + -0.6 273,236 + -1.0 273,236 + -0.3 273,237 - +0.6 273,237 - +0.2 273,237 - -0.7 273,237 - +0.1 273,237 - -0.5 273,251 + +0.0 273,252 - +1.0 273,252 - +0.5 273,252 - -0.7 273,252 - -0.8 273,261 + +0.2 273,262 - -0.4 273,262 - -1.2 273,262 - -0.5 273,297 + -1.2 273,298 - -1.1 273,298 - +0.6 273,308 + -0.3 273,309 - +0.0 273,309 - +0.7 273,309 - -0.8 273,309 - -0.6 273,368 + -0.5 273,395 + +1.1 273,395 + -2.9 273,395 + -1.6 273,396 - -0.3 273,396 - +1.0 273,396 - -1.0 273,396 - -1.0 273,396 - +0.5 273,396 - -1.1 273,396 - -0.6 273,396 - -0.9 273,396 - +0.1 273,510 + GFF2849 0.53 -0.4 273,510 + GFF2849 0.53 +0.2 273,510 + GFF2849 0.53 -0.3 273,510 + GFF2849 0.53 -0.4 273,510 + GFF2849 0.53 -0.1 273,510 + GFF2849 0.53 +0.2 273,510 + GFF2849 0.53 -0.7 273,510 + GFF2849 0.53 -0.7 273,510 + GFF2849 0.53 -0.8 273,510 + GFF2849 0.53 +0.4 273,510 + GFF2849 0.53 -0.9 273,510 + GFF2849 0.53 +0.0 273,510 + GFF2849 0.53 -0.1 273,510 + GFF2849 0.53 +1.0 273,510 + GFF2849 0.53 -1.9 273,510 + GFF2849 0.53 -0.8 273,511 - GFF2849 0.53 +0.7 273,511 - GFF2849 0.53 -0.3 273,511 - GFF2849 0.53 +0.6 273,511 - GFF2849 0.53 -1.7 273,511 - GFF2849 0.53 +0.6 273,511 - GFF2849 0.53 -0.3 273,511 - GFF2849 0.53 -2.4 273,511 - GFF2849 0.53 +1.3 273,511 - GFF2849 0.53 -1.0 273,511 - GFF2849 0.53 +0.3 273,511 - GFF2849 0.53 -0.9 273,534 + GFF2849 0.63 -0.3 273,534 + GFF2849 0.63 -1.7 273,534 + GFF2849 0.63 +0.5 273,534 + GFF2849 0.63 +0.2 273,534 + GFF2849 0.63 +2.0 273,534 + GFF2849 0.63 +0.1 273,534 + GFF2849 0.63 -0.1 273,534 + GFF2849 0.63 -0.4 273,534 + GFF2849 0.63 -0.3 273,534 + GFF2849 0.63 -0.2 273,534 + GFF2849 0.63 +0.7 273,535 - GFF2849 0.63 -0.6 273,535 - GFF2849 0.63 +0.6 273,535 - GFF2849 0.63 -0.3 273,535 - GFF2849 0.63 +0.6 273,535 - GFF2849 0.63 +1.3 273,535 - GFF2849 0.63 -0.2 273,535 - GFF2849 0.63 +0.0 273,535 - GFF2849 0.63 +0.5 273,535 - GFF2849 0.63 +0.4 273,535 - GFF2849 0.63 -0.6 273,535 - GFF2849 0.63 -0.7 273,535 - GFF2849 0.63 -0.1 273,600 + GFF2849 0.89 -0.7 273,601 - GFF2849 0.90 -0.6 273,671 + +0.6 273,671 + +0.4 273,671 + -0.1 273,671 + -0.1 273,671 + -0.5 273,671 + -0.3 273,671 + +0.5 273,671 + -0.4 273,671 + -0.8 273,672 - -0.1 273,672 - +1.0 273,672 - -0.4 273,672 - +0.3 273,672 - -1.4 273,672 - -0.2 273,672 - -1.0 273,672 - +0.1 273,672 - +0.1 273,672 - -0.1 273,672 - +0.1 273,672 - -0.2 273,734 + GFF2850 0.20 -0.6 273,735 - GFF2850 0.21 +0.9 273,735 - GFF2850 0.21 +0.3 273,758 + GFF2850 0.28 -0.3 273,758 + GFF2850 0.28 +0.0 273,758 + GFF2850 0.28 -0.4 273,758 + GFF2850 0.28 -2.0 273,758 + GFF2850 0.28 +1.3 273,759 - GFF2850 0.29 +0.9 273,759 - GFF2850 0.29 +0.2 273,759 - GFF2850 0.29 -0.2 273,759 - GFF2850 0.29 +0.0 273,759 - GFF2850 0.29 -0.5 273,869 + GFF2850 0.66 +0.0 273,869 + GFF2850 0.66 +0.1 273,869 + GFF2850 0.66 -1.5 273,869 + GFF2850 0.66 +0.0 273,870 - GFF2850 0.66 +0.2 273,870 - GFF2850 0.66 -0.4 273,870 - GFF2850 0.66 -0.4 273,878 + GFF2850 0.69 +0.2 273,878 + GFF2850 0.69 +0.1 273,879 - GFF2850 0.69 +0.3 273,879 - GFF2850 0.69 +0.0 273,879 - GFF2850 0.69 -2.0 273,879 - GFF2850 0.69 +0.3 273,879 - GFF2850 0.69 -0.4 273,879 - GFF2850 0.69 -0.3 273,879 - GFF2850 0.69 -0.2 273,894 - GFF2850 0.74 -0.0 273,924 + GFF2850 0.84 +1.9 273,924 + GFF2850 0.84 +0.1 273,924 + GFF2850 0.84 +0.7 273,924 + GFF2850 0.84 +0.9 273,924 + GFF2850 0.84 -0.1 273,924 + GFF2850 0.84 +0.4 273,924 + GFF2850 0.84 +0.2 273,924 + GFF2850 0.84 -0.5 273,925 - GFF2850 0.85 -2.7 273,925 - GFF2850 0.85 +0.5 273,925 - GFF2850 0.85 -0.2 273,925 - GFF2850 0.85 -0.0 273,925 - GFF2850 0.85 -0.3 273,925 - GFF2850 0.85 +1.3 273,950 + -1.5 273,999 + -0.6 273,999 + -1.5 273,999 + -0.6 273,999 + +0.2 273,999 + +1.2 274,000 - -0.8 274,000 - +0.3 274,000 - +0.2 274,000 - -0.3 274,000 - +0.0 274,000 - -2.1 274,000 - +0.1 274,000 - +0.6 274,000 - -0.2 274,000 - -0.4 274,000 - -0.3 274,000 - -0.2 274,017 + -0.3 274,017 + +0.1 274,017 + -1.2 274,017 + -1.0 274,018 - -1.5 274,018 - +0.1 274,018 - -0.4 274,018 - +2.3 274,018 - -0.5 274,018 - +0.1 274,050 + -0.6 274,050 + +0.3 274,050 + -0.1 274,050 + -0.0 274,050 + -0.9 274,050 + +0.0 274,050 + +1.1 274,050 + -0.6 274,050 + -0.8 274,051 - -0.6 274,051 - -0.3 274,051 - +0.1 274,051 - +0.0 274,051 - -0.2 274,051 - -0.2 274,051 - -1.6 274,051 - -0.6 274,051 - -0.2 274,102 + GFF2851 0.16 +0.3 274,102 + GFF2851 0.16 +0.6 274,102 + GFF2851 0.16 -0.9 274,102 + GFF2851 0.16 -0.6 274,102 + GFF2851 0.16 -0.5 274,102 + GFF2851 0.16 -0.6 274,103 - GFF2851 0.16 -0.3 274,103 - GFF2851 0.16 +1.6 274,103 - GFF2851 0.16 -0.4 274,103 - GFF2851 0.16 +0.0
Or see this region's nucleotide sequence