Strain Fitness in Variovorax sp. SCN45 around GFF2777

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2776 and GFF2777 are separated by 103 nucleotidesGFF2777 and GFF2778 are separated by 40 nucleotides GFF2776 - hypothetical protein, at 206,485 to 207,528 GFF2776 GFF2777 - Uncharacterized UPF0721 integral membrane protein, at 207,632 to 208,384 GFF2777 GFF2778 - Fosmidomycin resistance protein, at 208,425 to 209,678 GFF2778 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.762 kb on + strand, within GFF2776at 206.763 kb on - strand, within GFF2776at 206.802 kb on - strand, within GFF2776at 206.810 kb on + strand, within GFF2776at 206.811 kb on - strand, within GFF2776at 206.915 kb on + strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 206.916 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.132 kb on - strand, within GFF2776at 207.381 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776at 207.408 kb on - strand, within GFF2776at 207.464 kb on + strandat 207.464 kb on + strandat 207.464 kb on + strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.465 kb on - strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.557 kb on + strandat 207.558 kb on - strandat 207.558 kb on - strandat 207.741 kb on + strand, within GFF2777at 207.741 kb on + strand, within GFF2777at 207.741 kb on + strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.742 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 207.918 kb on - strand, within GFF2777at 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.371 kb on + strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.372 kb on - strandat 208.397 kb on - strandat 208.399 kb on - strandat 208.531 kb on + strandat 208.531 kb on + strandat 208.531 kb on + strandat 208.532 kb on - strandat 208.532 kb on - strandat 208.600 kb on + strand, within GFF2778at 208.600 kb on + strand, within GFF2778at 208.601 kb on - strand, within GFF2778at 208.601 kb on - strand, within GFF2778at 208.601 kb on - strand, within GFF2778at 208.612 kb on + strand, within GFF2778at 208.612 kb on + strand, within GFF2778at 208.612 kb on + strand, within GFF2778at 208.613 kb on - strand, within GFF2778at 208.613 kb on - strand, within GFF2778at 208.613 kb on - strand, within GFF2778at 208.613 kb on - strand, within GFF2778at 208.613 kb on - strand, within GFF2778at 208.678 kb on - strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.864 kb on + strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.865 kb on - strand, within GFF2778at 208.963 kb on + strand, within GFF2778at 208.963 kb on + strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 208.964 kb on - strand, within GFF2778at 209.098 kb on + strand, within GFF2778at 209.099 kb on - strand, within GFF2778at 209.099 kb on - strand, within GFF2778at 209.167 kb on + strand, within GFF2778at 209.167 kb on + strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.168 kb on - strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.242 kb on + strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.243 kb on - strand, within GFF2778at 209.290 kb on + strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.291 kb on - strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.356 kb on + strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778at 209.357 kb on - strand, within GFF2778

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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206,762 + GFF2776 0.27 +0.2
206,762 + GFF2776 0.27 -1.7
206,762 + GFF2776 0.27 -0.1
206,762 + GFF2776 0.27 -0.1
206,762 + GFF2776 0.27 -0.6
206,763 - GFF2776 0.27 +0.0
206,802 - GFF2776 0.30 +0.3
206,810 + GFF2776 0.31 -1.1
206,811 - GFF2776 0.31 +0.0
206,915 + GFF2776 0.41 -0.7
206,916 - GFF2776 0.41 -0.1
206,916 - GFF2776 0.41 +0.7
206,916 - GFF2776 0.41 -0.4
206,916 - GFF2776 0.41 -0.3
206,916 - GFF2776 0.41 +0.1
206,916 - GFF2776 0.41 -0.3
207,132 - GFF2776 0.62 -0.7
207,132 - GFF2776 0.62 +0.3
207,132 - GFF2776 0.62 +0.2
207,132 - GFF2776 0.62 -0.2
207,381 - GFF2776 0.86 +0.4
207,408 - GFF2776 0.88 -0.4
207,408 - GFF2776 0.88 -0.2
207,464 + +0.7
207,464 + -1.4
207,464 + +1.0
207,465 - +0.1
207,465 - +0.5
207,465 - -0.2
207,465 - +0.6
207,557 + -0.2
207,557 + -0.3
207,557 + -0.5
207,557 + -0.7
207,557 + +0.2
207,558 - -0.6
207,558 - +0.0
207,741 + GFF2777 0.14 +0.2
207,741 + GFF2777 0.14 -0.5
207,741 + GFF2777 0.14 +0.5
207,742 - GFF2777 0.15 +0.0
207,742 - GFF2777 0.15 +0.0
207,742 - GFF2777 0.15 +0.1
207,742 - GFF2777 0.15 +1.0
207,918 - GFF2777 0.38 -0.4
207,918 - GFF2777 0.38 +0.4
207,918 - GFF2777 0.38 +1.0
208,371 + +1.0
208,371 + +0.5
208,371 + -0.0
208,371 + +0.2
208,371 + +0.6
208,371 + -0.9
208,371 + -0.3
208,371 + -0.2
208,371 + -2.0
208,371 + -0.1
208,371 + -0.1
208,371 + -0.3
208,371 + +0.0
208,371 + -0.6
208,371 + +0.0
208,371 + -1.1
208,371 + +0.0
208,371 + -0.7
208,371 + -0.1
208,371 + -0.3
208,371 + +1.2
208,372 - +0.4
208,372 - -0.3
208,372 - +0.6
208,372 - +0.1
208,372 - +0.6
208,372 - -0.2
208,372 - -0.1
208,372 - +0.2
208,372 - +0.5
208,372 - +2.0
208,372 - -0.1
208,372 - +0.2
208,372 - -1.1
208,372 - +0.2
208,372 - +0.8
208,372 - -0.9
208,372 - -0.1
208,372 - +0.0
208,372 - -0.1
208,372 - -0.4
208,372 - +0.0
208,372 - -0.7
208,372 - +0.7
208,397 - -0.7
208,399 - +1.6
208,531 + +1.6
208,531 + -0.3
208,531 + +0.6
208,532 - +2.0
208,532 - +0.6
208,600 + GFF2778 0.14 +1.4
208,600 + GFF2778 0.14 +0.2
208,601 - GFF2778 0.14 -0.6
208,601 - GFF2778 0.14 +0.2
208,601 - GFF2778 0.14 -0.4
208,612 + GFF2778 0.15 +1.4
208,612 + GFF2778 0.15 +0.6
208,612 + GFF2778 0.15 -1.1
208,613 - GFF2778 0.15 -0.4
208,613 - GFF2778 0.15 +0.4
208,613 - GFF2778 0.15 -0.3
208,613 - GFF2778 0.15 +1.2
208,613 - GFF2778 0.15 +0.2
208,678 - GFF2778 0.20 -0.9
208,864 + GFF2778 0.35 -1.7
208,864 + GFF2778 0.35 -1.5
208,864 + GFF2778 0.35 +0.4
208,864 + GFF2778 0.35 +0.8
208,864 + GFF2778 0.35 -0.6
208,864 + GFF2778 0.35 -0.3
208,864 + GFF2778 0.35 -0.2
208,864 + GFF2778 0.35 -2.7
208,864 + GFF2778 0.35 -0.2
208,864 + GFF2778 0.35 +0.5
208,864 + GFF2778 0.35 -0.3
208,865 - GFF2778 0.35 -0.1
208,865 - GFF2778 0.35 +0.5
208,865 - GFF2778 0.35 -0.0
208,865 - GFF2778 0.35 -0.2
208,865 - GFF2778 0.35 -0.0
208,865 - GFF2778 0.35 -0.2
208,963 + GFF2778 0.43 -0.7
208,963 + GFF2778 0.43 -0.5
208,964 - GFF2778 0.43 +0.2
208,964 - GFF2778 0.43 -0.4
208,964 - GFF2778 0.43 +0.3
208,964 - GFF2778 0.43 +0.8
209,098 + GFF2778 0.54 -0.6
209,099 - GFF2778 0.54 -0.0
209,099 - GFF2778 0.54 -0.6
209,167 + GFF2778 0.59 -0.6
209,167 + GFF2778 0.59 -0.6
209,168 - GFF2778 0.59 +0.1
209,168 - GFF2778 0.59 +0.9
209,168 - GFF2778 0.59 +0.0
209,242 + GFF2778 0.65 -1.2
209,242 + GFF2778 0.65 +1.0
209,242 + GFF2778 0.65 -1.0
209,242 + GFF2778 0.65 -0.4
209,242 + GFF2778 0.65 -0.6
209,243 - GFF2778 0.65 -0.9
209,243 - GFF2778 0.65 +0.2
209,243 - GFF2778 0.65 +0.4
209,243 - GFF2778 0.65 -0.8
209,243 - GFF2778 0.65 -0.9
209,243 - GFF2778 0.65 +0.1
209,290 + GFF2778 0.69 -0.4
209,291 - GFF2778 0.69 -0.2
209,291 - GFF2778 0.69 +0.3
209,291 - GFF2778 0.69 -0.4
209,356 + GFF2778 0.74 -0.2
209,356 + GFF2778 0.74 -0.4
209,356 + GFF2778 0.74 -0.3
209,357 - GFF2778 0.74 -0.2
209,357 - GFF2778 0.74 -0.5
209,357 - GFF2778 0.74 +0.0
209,357 - GFF2778 0.74 -0.2
209,357 - GFF2778 0.74 +0.1
209,357 - GFF2778 0.74 +2.0

Or see this region's nucleotide sequence