Strain Fitness in Variovorax sp. SCN45 around GFF2682

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2681 and GFF2682 are separated by 37 nucleotidesGFF2682 and GFF2683 are separated by 13 nucleotides GFF2681 - Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue, at 103,667 to 105,241 GFF2681 GFF2682 - Protein containing domains DUF403, at 105,279 to 106,235 GFF2682 GFF2683 - Protein containing domains DUF404, DUF407, at 106,249 to 107,748 GFF2683 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 104.339 kb on + strand, within GFF2681at 104.345 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.531 kb on + strand, within GFF2681at 104.744 kb on + strand, within GFF2681at 104.744 kb on + strand, within GFF2681at 104.745 kb on - strand, within GFF2681at 104.745 kb on - strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.858 kb on + strand, within GFF2681at 104.859 kb on - strand, within GFF2681at 104.859 kb on - strand, within GFF2681at 104.876 kb on + strand, within GFF2681at 104.877 kb on - strand, within GFF2681at 104.877 kb on - strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.954 kb on + strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 104.955 kb on - strand, within GFF2681at 105.189 kb on - strandat 105.355 kb on + strandat 105.355 kb on + strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.356 kb on - strandat 105.397 kb on + strand, within GFF2682at 105.583 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.628 kb on + strand, within GFF2682at 105.629 kb on - strand, within GFF2682at 105.637 kb on + strand, within GFF2682at 105.638 kb on - strand, within GFF2682at 105.740 kb on + strand, within GFF2682at 105.740 kb on + strand, within GFF2682at 105.757 kb on + strand, within GFF2682at 105.757 kb on + strand, within GFF2682at 105.758 kb on - strand, within GFF2682at 105.758 kb on - strand, within GFF2682at 106.049 kb on - strand, within GFF2682at 106.060 kb on + strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.061 kb on - strand, within GFF2682at 106.105 kb on + strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.106 kb on - strand, within GFF2682at 106.147 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.193 kb on - strandat 106.207 kb on + strandat 106.207 kb on + strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.208 kb on - strandat 106.223 kb on + strandat 106.223 kb on + strandat 106.223 kb on + strandat 106.520 kb on + strand, within GFF2683at 106.520 kb on + strand, within GFF2683at 106.520 kb on + strand, within GFF2683at 106.520 kb on + strand, within GFF2683at 106.520 kb on + strand, within GFF2683at 106.520 kb on + strand, within GFF2683at 106.521 kb on - strand, within GFF2683at 106.521 kb on - strand, within GFF2683at 106.521 kb on - strand, within GFF2683at 106.521 kb on - strand, within GFF2683at 106.521 kb on - strand, within GFF2683at 106.658 kb on + strand, within GFF2683at 106.658 kb on + strand, within GFF2683at 106.658 kb on + strand, within GFF2683at 106.658 kb on + strand, within GFF2683at 106.659 kb on - strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.688 kb on + strand, within GFF2683at 106.689 kb on - strand, within GFF2683at 106.689 kb on - strand, within GFF2683at 106.689 kb on - strand, within GFF2683at 106.689 kb on - strand, within GFF2683at 106.689 kb on - strand, within GFF2683at 106.727 kb on + strand, within GFF2683at 106.727 kb on + strand, within GFF2683at 106.728 kb on - strand, within GFF2683at 106.728 kb on - strand, within GFF2683at 106.751 kb on + strand, within GFF2683at 106.751 kb on + strand, within GFF2683at 106.751 kb on + strand, within GFF2683at 106.751 kb on + strand, within GFF2683at 106.752 kb on - strand, within GFF2683at 106.752 kb on - strand, within GFF2683at 106.752 kb on - strand, within GFF2683at 106.757 kb on + strand, within GFF2683at 106.757 kb on + strand, within GFF2683at 106.758 kb on - strand, within GFF2683at 106.758 kb on - strand, within GFF2683at 106.908 kb on - strand, within GFF2683at 106.908 kb on - strand, within GFF2683at 106.908 kb on - strand, within GFF2683at 106.949 kb on + strand, within GFF2683at 106.949 kb on + strand, within GFF2683at 106.949 kb on + strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 106.950 kb on - strand, within GFF2683at 107.034 kb on - strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.045 kb on + strand, within GFF2683at 107.046 kb on - strand, within GFF2683at 107.046 kb on - strand, within GFF2683at 107.046 kb on - strand, within GFF2683at 107.046 kb on - strand, within GFF2683at 107.046 kb on - strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.213 kb on + strand, within GFF2683at 107.214 kb on - strand, within GFF2683at 107.214 kb on - strand, within GFF2683at 107.214 kb on - strand, within GFF2683

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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104,339 + GFF2681 0.43 +0.4
104,345 + GFF2681 0.43 -1.2
104,531 + GFF2681 0.55 +0.4
104,531 + GFF2681 0.55 -1.9
104,531 + GFF2681 0.55 +0.6
104,744 + GFF2681 0.68 -0.1
104,744 + GFF2681 0.68 -0.1
104,745 - GFF2681 0.68 +0.6
104,745 - GFF2681 0.68 -0.4
104,858 + GFF2681 0.76 -1.4
104,858 + GFF2681 0.76 +0.9
104,858 + GFF2681 0.76 +0.6
104,859 - GFF2681 0.76 +0.7
104,859 - GFF2681 0.76 +0.9
104,876 + GFF2681 0.77 +0.3
104,877 - GFF2681 0.77 -0.5
104,877 - GFF2681 0.77 +0.2
104,954 + GFF2681 0.82 -0.7
104,954 + GFF2681 0.82 -0.7
104,954 + GFF2681 0.82 +0.3
104,954 + GFF2681 0.82 +0.9
104,955 - GFF2681 0.82 -0.5
104,955 - GFF2681 0.82 -1.0
104,955 - GFF2681 0.82 -0.5
104,955 - GFF2681 0.82 -0.2
104,955 - GFF2681 0.82 -2.0
104,955 - GFF2681 0.82 -0.1
104,955 - GFF2681 0.82 -0.2
104,955 - GFF2681 0.82 +0.9
104,955 - GFF2681 0.82 -2.7
104,955 - GFF2681 0.82 +0.2
105,189 - +1.6
105,355 + -0.2
105,355 + +0.1
105,356 - -0.4
105,356 - +0.3
105,356 - +0.8
105,356 - +0.4
105,356 - +0.2
105,356 - -0.1
105,356 - -0.4
105,397 + GFF2682 0.12 -0.0
105,583 + GFF2682 0.32 -0.2
105,628 + GFF2682 0.36 +0.1
105,628 + GFF2682 0.36 +0.2
105,628 + GFF2682 0.36 -0.2
105,628 + GFF2682 0.36 +0.5
105,629 - GFF2682 0.37 -0.2
105,637 + GFF2682 0.37 -0.4
105,638 - GFF2682 0.38 +0.0
105,740 + GFF2682 0.48 +0.9
105,740 + GFF2682 0.48 -0.1
105,757 + GFF2682 0.50 +0.4
105,757 + GFF2682 0.50 -0.3
105,758 - GFF2682 0.50 +0.6
105,758 - GFF2682 0.50 -1.0
106,049 - GFF2682 0.80 -0.2
106,060 + GFF2682 0.82 -0.5
106,061 - GFF2682 0.82 +0.6
106,061 - GFF2682 0.82 +0.4
106,061 - GFF2682 0.82 -0.0
106,105 + GFF2682 0.86 +2.6
106,106 - GFF2682 0.86 +1.0
106,106 - GFF2682 0.86 +0.1
106,106 - GFF2682 0.86 +0.1
106,147 + +1.6
106,192 + -0.1
106,192 + -2.1
106,193 - -0.4
106,207 + -0.2
106,207 + -0.8
106,208 - +0.0
106,208 - -1.0
106,208 - -0.9
106,208 - +0.3
106,208 - +1.6
106,208 - +0.7
106,223 + +0.9
106,223 + -0.1
106,223 + +0.9
106,520 + GFF2683 0.18 -0.1
106,520 + GFF2683 0.18 +0.7
106,520 + GFF2683 0.18 -0.6
106,520 + GFF2683 0.18 +0.6
106,520 + GFF2683 0.18 +0.3
106,520 + GFF2683 0.18 -0.1
106,521 - GFF2683 0.18 -0.2
106,521 - GFF2683 0.18 -0.2
106,521 - GFF2683 0.18 -0.2
106,521 - GFF2683 0.18 -1.9
106,521 - GFF2683 0.18 +0.2
106,658 + GFF2683 0.27 -0.5
106,658 + GFF2683 0.27 +0.7
106,658 + GFF2683 0.27 +0.1
106,658 + GFF2683 0.27 -0.1
106,659 - GFF2683 0.27 +2.6
106,688 + GFF2683 0.29 -0.8
106,688 + GFF2683 0.29 -0.3
106,688 + GFF2683 0.29 +1.2
106,688 + GFF2683 0.29 +1.6
106,688 + GFF2683 0.29 -0.8
106,688 + GFF2683 0.29 -0.3
106,688 + GFF2683 0.29 -0.3
106,688 + GFF2683 0.29 +0.2
106,688 + GFF2683 0.29 -1.1
106,688 + GFF2683 0.29 +0.2
106,689 - GFF2683 0.29 +0.5
106,689 - GFF2683 0.29 +1.1
106,689 - GFF2683 0.29 +0.6
106,689 - GFF2683 0.29 -1.3
106,689 - GFF2683 0.29 -0.2
106,727 + GFF2683 0.32 +0.6
106,727 + GFF2683 0.32 +0.1
106,728 - GFF2683 0.32 +1.6
106,728 - GFF2683 0.32 +0.0
106,751 + GFF2683 0.33 -0.9
106,751 + GFF2683 0.33 +0.8
106,751 + GFF2683 0.33 +0.2
106,751 + GFF2683 0.33 -0.0
106,752 - GFF2683 0.34 -1.6
106,752 - GFF2683 0.34 +0.5
106,752 - GFF2683 0.34 -0.4
106,757 + GFF2683 0.34 +0.3
106,757 + GFF2683 0.34 +0.2
106,758 - GFF2683 0.34 -0.1
106,758 - GFF2683 0.34 -0.6
106,908 - GFF2683 0.44 +0.5
106,908 - GFF2683 0.44 -1.4
106,908 - GFF2683 0.44 -0.2
106,949 + GFF2683 0.47 +0.1
106,949 + GFF2683 0.47 -1.2
106,949 + GFF2683 0.47 -0.4
106,950 - GFF2683 0.47 -1.4
106,950 - GFF2683 0.47 +0.5
106,950 - GFF2683 0.47 +0.0
106,950 - GFF2683 0.47 -0.1
106,950 - GFF2683 0.47 -0.1
106,950 - GFF2683 0.47 -0.3
107,034 - GFF2683 0.52 -0.3
107,045 + GFF2683 0.53 +1.0
107,045 + GFF2683 0.53 +0.5
107,045 + GFF2683 0.53 -2.1
107,045 + GFF2683 0.53 -0.3
107,045 + GFF2683 0.53 -1.1
107,045 + GFF2683 0.53 +0.6
107,045 + GFF2683 0.53 +0.4
107,045 + GFF2683 0.53 -0.4
107,045 + GFF2683 0.53 -1.9
107,046 - GFF2683 0.53 -0.4
107,046 - GFF2683 0.53 +0.9
107,046 - GFF2683 0.53 -0.2
107,046 - GFF2683 0.53 -0.3
107,046 - GFF2683 0.53 +0.0
107,213 + GFF2683 0.64 +0.5
107,213 + GFF2683 0.64 +0.3
107,213 + GFF2683 0.64 -0.0
107,213 + GFF2683 0.64 -0.1
107,213 + GFF2683 0.64 -0.2
107,213 + GFF2683 0.64 -0.4
107,213 + GFF2683 0.64 -0.2
107,214 - GFF2683 0.64 -0.3
107,214 - GFF2683 0.64 -0.8
107,214 - GFF2683 0.64 -1.6

Or see this region's nucleotide sequence