Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2671 and GFF2672 are separated by 11 nucleotides GFF2672 and GFF2673 overlap by 1 nucleotides GFF2673 and GFF2674 overlap by 4 nucleotides
GFF2671 - Domain of unknown function / Efflux ABC transporter, permease protein, at 93,134 to 94,291
GFF2671
GFF2672 - ABC transporter, ATP-binding protein, at 94,303 to 95,211
GFF2672
GFF2673 - FIG00655207: hypothetical protein, at 95,211 to 96,191
GFF2673
GFF2674 - FIG00653968: hypothetical protein, at 96,188 to 96,583
GFF2674
Position (kb) 94
95
96 Strain fitness (log2 ratio) -2
-1
0
1
2 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.362 kb on + strand, within GFF2671 at 93.363 kb on - strand, within GFF2671 at 94.011 kb on + strand, within GFF2671 at 94.011 kb on + strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.012 kb on - strand, within GFF2671 at 94.140 kb on + strand, within GFF2671 at 94.140 kb on + strand, within GFF2671 at 94.141 kb on - strand, within GFF2671 at 94.141 kb on - strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.167 kb on + strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.168 kb on - strand, within GFF2671 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.634 kb on + strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.635 kb on - strand, within GFF2672 at 94.646 kb on + strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.647 kb on - strand, within GFF2672 at 94.950 kb on - strand, within GFF2672 at 95.180 kb on + strand at 95.441 kb on - strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.680 kb on + strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.681 kb on - strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.785 kb on + strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.807 kb on - strand, within GFF2673 at 95.857 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 95.869 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673 at 96.064 kb on + strand, within GFF2673
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 93,362 + GFF2671 0.20 -0.1 93,362 + GFF2671 0.20 -0.4 93,362 + GFF2671 0.20 +0.5 93,363 - GFF2671 0.20 -0.5 94,011 + GFF2671 0.76 -0.3 94,011 + GFF2671 0.76 +0.6 94,012 - GFF2671 0.76 -0.5 94,012 - GFF2671 0.76 -0.2 94,012 - GFF2671 0.76 -1.2 94,140 + GFF2671 0.87 +0.4 94,140 + GFF2671 0.87 -0.1 94,141 - GFF2671 0.87 -0.5 94,141 - GFF2671 0.87 -0.1 94,167 + GFF2671 0.89 -0.2 94,167 + GFF2671 0.89 +0.0 94,167 + GFF2671 0.89 +0.4 94,168 - GFF2671 0.89 -0.4 94,168 - GFF2671 0.89 -0.4 94,168 - GFF2671 0.89 -0.9 94,168 - GFF2671 0.89 -0.6 94,634 + GFF2672 0.36 +0.6 94,634 + GFF2672 0.36 -1.9 94,634 + GFF2672 0.36 +0.3 94,635 - GFF2672 0.37 -1.2 94,635 - GFF2672 0.37 +0.0 94,646 + GFF2672 0.38 +0.6 94,647 - GFF2672 0.38 -0.9 94,647 - GFF2672 0.38 -0.4 94,647 - GFF2672 0.38 -0.6 94,647 - GFF2672 0.38 -0.7 94,950 - GFF2672 0.71 -1.2 95,180 + -0.2 95,441 - GFF2673 0.23 -1.0 95,680 + GFF2673 0.48 +0.7 95,680 + GFF2673 0.48 -1.9 95,680 + GFF2673 0.48 +1.3 95,680 + GFF2673 0.48 -1.0 95,680 + GFF2673 0.48 -0.6 95,680 + GFF2673 0.48 -0.7 95,680 + GFF2673 0.48 +0.7 95,680 + GFF2673 0.48 -2.3 95,680 + GFF2673 0.48 -0.3 95,681 - GFF2673 0.48 +2.0 95,681 - GFF2673 0.48 +0.1 95,785 + GFF2673 0.59 +0.2 95,785 + GFF2673 0.59 +0.6 95,807 - GFF2673 0.61 -0.3 95,807 - GFF2673 0.61 -0.1 95,857 + GFF2673 0.66 -0.6 95,869 + GFF2673 0.67 -1.8 95,869 + GFF2673 0.67 +1.6 96,064 + GFF2673 0.87 -0.7 96,064 + GFF2673 0.87 -0.2
Or see this region's nucleotide sequence