Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF24 and GFF25 are separated by 140 nucleotides GFF25 and GFF26 are separated by 134 nucleotides
GFF24 - VgrG protein, at 26,729 to 29,071
GFF24
GFF25 - Alcohol dehydrogenase (EC 1.1.1.1), at 29,212 to 30,348
GFF25
GFF26 - Esterase/lipase, at 30,483 to 31,463
GFF26
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 28.305 kb on + strand, within GFF24 at 28.305 kb on + strand, within GFF24 at 28.306 kb on - strand, within GFF24 at 28.314 kb on + strand, within GFF24 at 28.314 kb on + strand, within GFF24 at 28.314 kb on + strand, within GFF24 at 28.518 kb on + strand, within GFF24 at 28.518 kb on + strand, within GFF24 at 28.578 kb on + strand, within GFF24 at 28.635 kb on + strand, within GFF24 at 28.662 kb on + strand, within GFF24 at 28.663 kb on - strand, within GFF24 at 28.663 kb on - strand, within GFF24 at 28.663 kb on - strand, within GFF24 at 28.698 kb on + strand, within GFF24 at 28.698 kb on + strand, within GFF24 at 28.699 kb on - strand, within GFF24 at 28.776 kb on + strand, within GFF24 at 28.777 kb on - strand, within GFF24 at 28.777 kb on - strand, within GFF24 at 28.806 kb on + strand, within GFF24 at 28.807 kb on - strand, within GFF24 at 28.807 kb on - strand, within GFF24 at 28.807 kb on - strand, within GFF24 at 28.812 kb on + strand, within GFF24 at 28.812 kb on + strand, within GFF24 at 28.812 kb on + strand, within GFF24 at 28.812 kb on + strand, within GFF24 at 28.813 kb on - strand, within GFF24 at 28.813 kb on - strand, within GFF24 at 29.213 kb on + strand at 29.213 kb on + strand at 29.214 kb on - strand at 29.241 kb on - strand at 29.241 kb on - strand at 29.241 kb on - strand at 29.335 kb on + strand, within GFF25 at 30.003 kb on - strand, within GFF25 at 30.003 kb on - strand, within GFF25 at 30.003 kb on - strand, within GFF25 at 30.003 kb on - strand, within GFF25 at 30.003 kb on - strand, within GFF25 at 30.110 kb on + strand, within GFF25 at 30.111 kb on - strand, within GFF25 at 30.111 kb on - strand, within GFF25 at 30.332 kb on + strand at 30.333 kb on - strand at 30.333 kb on - strand at 30.394 kb on + strand at 30.395 kb on - strand at 30.476 kb on + strand at 30.631 kb on - strand, within GFF26 at 30.735 kb on + strand, within GFF26 at 30.735 kb on + strand, within GFF26 at 30.771 kb on + strand, within GFF26 at 31.080 kb on + strand, within GFF26 at 31.081 kb on - strand, within GFF26 at 31.081 kb on - strand, within GFF26 at 31.179 kb on + strand, within GFF26 at 31.179 kb on + strand, within GFF26 at 31.180 kb on - strand, within GFF26 at 31.180 kb on - strand, within GFF26 at 31.180 kb on - strand, within GFF26 at 31.180 kb on - strand, within GFF26 at 31.309 kb on - strand, within GFF26
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 28,305 + GFF24 0.67 -0.9 28,305 + GFF24 0.67 +0.6 28,306 - GFF24 0.67 -0.0 28,314 + GFF24 0.68 +0.5 28,314 + GFF24 0.68 -0.8 28,314 + GFF24 0.68 -0.8 28,518 + GFF24 0.76 -1.1 28,518 + GFF24 0.76 -0.2 28,578 + GFF24 0.79 -0.3 28,635 + GFF24 0.81 -0.3 28,662 + GFF24 0.83 -0.2 28,663 - GFF24 0.83 +0.2 28,663 - GFF24 0.83 -0.1 28,663 - GFF24 0.83 -0.4 28,698 + GFF24 0.84 -0.2 28,698 + GFF24 0.84 -0.2 28,699 - GFF24 0.84 -0.2 28,776 + GFF24 0.87 +0.1 28,777 - GFF24 0.87 -1.2 28,777 - GFF24 0.87 -0.9 28,806 + GFF24 0.89 +3.1 28,807 - GFF24 0.89 +1.1 28,807 - GFF24 0.89 -0.6 28,807 - GFF24 0.89 -1.1 28,812 + GFF24 0.89 -0.3 28,812 + GFF24 0.89 -1.6 28,812 + GFF24 0.89 +0.7 28,812 + GFF24 0.89 -0.6 28,813 - GFF24 0.89 -0.4 28,813 - GFF24 0.89 +0.7 29,213 + +0.7 29,213 + +1.3 29,214 - -1.5 29,241 - +1.0 29,241 - -0.5 29,241 - +0.6 29,335 + GFF25 0.11 -0.5 30,003 - GFF25 0.70 -0.6 30,003 - GFF25 0.70 -0.1 30,003 - GFF25 0.70 +0.3 30,003 - GFF25 0.70 -0.2 30,003 - GFF25 0.70 -1.2 30,110 + GFF25 0.79 +0.2 30,111 - GFF25 0.79 -1.4 30,111 - GFF25 0.79 -2.0 30,332 + -0.2 30,333 - -0.0 30,333 - +0.6 30,394 + -1.0 30,395 - -1.0 30,476 + +1.6 30,631 - GFF26 0.15 -0.3 30,735 + GFF26 0.26 +1.3 30,735 + GFF26 0.26 +0.1 30,771 + GFF26 0.29 -0.6 31,080 + GFF26 0.61 -0.1 31,081 - GFF26 0.61 +0.9 31,081 - GFF26 0.61 -0.4 31,179 + GFF26 0.71 -0.2 31,179 + GFF26 0.71 -0.7 31,180 - GFF26 0.71 -0.1 31,180 - GFF26 0.71 +1.1 31,180 - GFF26 0.71 -1.5 31,180 - GFF26 0.71 -0.1 31,309 - GFF26 0.84 -0.2
Or see this region's nucleotide sequence