Strain Fitness in Variovorax sp. SCN45 around GFF2484

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2483 and GFF2484 overlap by 1 nucleotidesGFF2484 and GFF2485 are separated by 13 nucleotidesGFF2485 and GFF2486 are separated by 25 nucleotides GFF2483 - Urease alpha subunit (EC 3.5.1.5), at 540,349 to 542,067 GFF2483 GFF2484 - Urease beta subunit (EC 3.5.1.5), at 542,067 to 542,372 GFF2484 GFF2485 - Nickel-binding accessory protein UreJ-HupE, at 542,386 to 542,985 GFF2485 GFF2486 - Urease gamma subunit (EC 3.5.1.5), at 543,011 to 543,313 GFF2486 Position (kb) 542 543Strain fitness (log2 ratio) -1 0 1at 541.142 kb on + strand, within GFF2483at 541.142 kb on + strand, within GFF2483at 541.142 kb on + strand, within GFF2483at 541.143 kb on - strand, within GFF2483at 541.143 kb on - strand, within GFF2483at 541.941 kb on - strandat 541.961 kb on + strandat 541.961 kb on + strandat 542.005 kb on + strandat 542.043 kb on - strandat 542.255 kb on - strand, within GFF2484at 542.255 kb on - strand, within GFF2484at 543.219 kb on + strand, within GFF2486

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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541,142 + GFF2483 0.46 +0.0
541,142 + GFF2483 0.46 -0.2
541,142 + GFF2483 0.46 +0.4
541,143 - GFF2483 0.46 -0.8
541,143 - GFF2483 0.46 -1.0
541,941 - +0.4
541,961 + -0.8
541,961 + -0.2
542,005 + +0.6
542,043 - +0.0
542,255 - GFF2484 0.61 -0.7
542,255 - GFF2484 0.61 -0.4
543,219 + GFF2486 0.69 -0.5

Or see this region's nucleotide sequence