Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2460 and GFF2461 are separated by 17 nucleotides GFF2461 and GFF2462 overlap by 4 nucleotides GFF2462 and GFF2463 are separated by 21 nucleotides GFF2463 and GFF2464 overlap by 4 nucleotides
GFF2460 - Heavy metal RND efflux outer membrane protein, CzcC family, at 518,729 to 520,042
GFF2460
GFF2461 - no description, at 520,060 to 520,491
GFF2461
GFF2462 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 520,488 to 523,253
GFF2462
GFF2463 - Response regulator BaeR, at 523,275 to 523,973
GFF2463
GFF2464 - Sensory histidine kinase BaeS, at 523,970 to 525,730
GFF2464
Position (kb) 520
521
522
523
524 Strain fitness (log2 ratio) -2
-1
0
1 at 519.579 kb on - strand, within GFF2460 at 519.798 kb on - strand, within GFF2460 at 519.956 kb on + strand at 520.187 kb on - strand, within GFF2461 at 520.797 kb on + strand, within GFF2462 at 520.797 kb on + strand, within GFF2462 at 520.798 kb on - strand, within GFF2462 at 520.798 kb on - strand, within GFF2462 at 520.798 kb on - strand, within GFF2462 at 520.798 kb on - strand, within GFF2462 at 520.845 kb on + strand, within GFF2462 at 520.846 kb on - strand, within GFF2462 at 520.846 kb on - strand, within GFF2462 at 520.846 kb on - strand, within GFF2462 at 521.766 kb on + strand, within GFF2462 at 521.766 kb on + strand, within GFF2462 at 521.779 kb on - strand, within GFF2462 at 521.779 kb on - strand, within GFF2462 at 522.174 kb on + strand, within GFF2462 at 522.434 kb on - strand, within GFF2462 at 522.648 kb on + strand, within GFF2462 at 522.648 kb on + strand, within GFF2462 at 522.649 kb on - strand, within GFF2462 at 522.649 kb on - strand, within GFF2462 at 522.766 kb on - strand, within GFF2462 at 523.162 kb on - strand at 523.195 kb on - strand at 523.227 kb on + strand at 523.681 kb on + strand, within GFF2463 at 523.682 kb on - strand, within GFF2463 at 523.915 kb on + strand at 523.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 519,579 - GFF2460 0.65 -0.5 519,798 - GFF2460 0.81 -0.4 519,956 + -1.8 520,187 - GFF2461 0.29 -0.0 520,797 + GFF2462 0.11 -0.5 520,797 + GFF2462 0.11 -0.3 520,798 - GFF2462 0.11 -0.5 520,798 - GFF2462 0.11 -0.1 520,798 - GFF2462 0.11 -0.2 520,798 - GFF2462 0.11 -0.8 520,845 + GFF2462 0.13 +0.2 520,846 - GFF2462 0.13 -1.1 520,846 - GFF2462 0.13 -1.8 520,846 - GFF2462 0.13 +0.4 521,766 + GFF2462 0.46 -0.2 521,766 + GFF2462 0.46 -0.1 521,779 - GFF2462 0.47 +0.2 521,779 - GFF2462 0.47 -0.9 522,174 + GFF2462 0.61 +0.1 522,434 - GFF2462 0.70 -0.2 522,648 + GFF2462 0.78 -1.1 522,648 + GFF2462 0.78 -0.3 522,649 - GFF2462 0.78 +1.7 522,649 - GFF2462 0.78 +0.0 522,766 - GFF2462 0.82 +0.1 523,162 - -0.3 523,195 - +0.2 523,227 + -0.6 523,681 + GFF2463 0.58 +0.1 523,682 - GFF2463 0.58 +0.7 523,915 + -0.6 523,916 - -0.2
Or see this region's nucleotide sequence