Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2451 and GFF2452 are separated by 92 nucleotides GFF2452 and GFF2453 are separated by 85 nucleotides
GFF2451 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 506,694 to 508,199
GFF2451
GFF2452 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1), at 508,292 to 509,602
GFF2452
GFF2453 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1), at 509,688 to 511,058
GFF2453
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.643 kb on + strand, within GFF2451 at 507.643 kb on + strand, within GFF2451 at 507.644 kb on - strand, within GFF2451 at 507.688 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.802 kb on + strand, within GFF2451 at 507.803 kb on - strand, within GFF2451 at 507.803 kb on - strand, within GFF2451 at 507.934 kb on + strand, within GFF2451 at 507.934 kb on + strand, within GFF2451 at 508.057 kb on + strand at 508.106 kb on - strand at 508.106 kb on - strand at 508.348 kb on - strand at 508.485 kb on + strand, within GFF2452 at 508.486 kb on - strand, within GFF2452 at 508.734 kb on + strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 509.100 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452 at 509.410 kb on - strand, within GFF2452 at 509.421 kb on + strand, within GFF2452 at 509.796 kb on + strand at 509.796 kb on + strand at 509.796 kb on + strand at 509.797 kb on - strand at 509.797 kb on - strand at 510.346 kb on + strand, within GFF2453 at 510.346 kb on + strand, within GFF2453 at 510.469 kb on + strand, within GFF2453 at 510.470 kb on - strand, within GFF2453
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 507,643 + GFF2451 0.63 -2.6 507,643 + GFF2451 0.63 +1.1 507,644 - GFF2451 0.63 -1.4 507,688 + GFF2451 0.66 -0.6 507,802 + GFF2451 0.74 +0.4 507,802 + GFF2451 0.74 +0.1 507,802 + GFF2451 0.74 -0.1 507,803 - GFF2451 0.74 -2.6 507,803 - GFF2451 0.74 +0.5 507,934 + GFF2451 0.82 -1.2 507,934 + GFF2451 0.82 +0.8 508,057 + -0.0 508,106 - +0.0 508,106 - -0.4 508,348 - -0.8 508,485 + GFF2452 0.15 +0.7 508,486 - GFF2452 0.15 -0.5 508,734 + GFF2452 0.34 +0.1 508,735 - GFF2452 0.34 -0.5 508,735 - GFF2452 0.34 -0.3 508,735 - GFF2452 0.34 +0.5 508,876 + GFF2452 0.45 -0.5 508,876 + GFF2452 0.45 +0.7 508,876 + GFF2452 0.45 -0.3 508,877 - GFF2452 0.45 -0.6 508,877 - GFF2452 0.45 -0.4 509,100 + GFF2452 0.62 -1.4 509,133 + GFF2452 0.64 +0.1 509,133 + GFF2452 0.64 -1.7 509,410 - GFF2452 0.85 -0.3 509,421 + GFF2452 0.86 -1.1 509,796 + -0.5 509,796 + -0.3 509,796 + -0.3 509,797 - -0.2 509,797 - -0.1 510,346 + GFF2453 0.48 -0.4 510,346 + GFF2453 0.48 -0.8 510,469 + GFF2453 0.57 -0.8 510,470 - GFF2453 0.57 -0.0
Or see this region's nucleotide sequence